80fea8ced35411463d415e35ce77cff8db313d46 lrnassar Fri Feb 19 16:28:41 2021 -0800 Refs #26938 diff --git src/hg/htdocs/goldenPath/help/gbib.html src/hg/htdocs/goldenPath/help/gbib.html index 696753e..d20e1ee 100755 --- src/hg/htdocs/goldenPath/help/gbib.html +++ src/hg/htdocs/goldenPath/help/gbib.html @@ -529,47 +529,49 @@ "https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSM1186795&format=file&file=GSM1186795%5FDZ012%5FTRA1%5FN2L3%5Ftr27%5Fce10%5FBTm1x200n%2Ebw" -O GSM1186795.bw </code></pre> <p> The file can then be found in the GBiB's <a href="http://127.0.0.1:1234/folders/"><code>http://127.0.0.1:1234/folders/</code></a> location, or loaded with a direct link to the files location:</p> <pre><code><a href="http://127.0.0.1:1234/cgi-bin/hgTracks?db=hg19&hgt.customText=http://127.0.0.1:1234/folders/GSM1186795.bw&position=chrM" target="_blank">http://127.0.0.1:1234/cgi-bin/hgTracks?db=hg19&hgt.customText=<strong>http://127.0.0.1:1234/folders/GSM1186795.bw</strong>&position=chrM</a></code></pre> <p> (NOTE: In this above example, the <strong>ftp location</strong> now has byte-range requests supported so the <strong>GEO ftp link</strong> can be loaded on the browser).</p> <a name="CustomizingGbib"></a> <h2>Customizing your GBiB</h2> +<!-- <a name="Fonts"></a> <h3>Enabling additional font styles</h3> <p> In order to enable the use of additional fonts in the tracks display, the following lines need to be need to be added to the <code>hg.conf</code> file:</p> <pre> freeType=on freeTypeDir=/usr/share/fonts/type1/gsfonts </pre> <p> The file can be found in the following location:</p> <pre> /usr/local/apache/cgi-bin/hg.conf </pre> <p> The fonts can then be change by pressing the <strong>configuration</strong> located below the image on the tracks display.</p>. +--> <a name="Defaults"></a> <h3>Changing the default Genome Browser options on a GBiB</h3> <p> GBiB supports changes to some default settings such as assembly, attached hubs, fonts, text size, etc. Changing these defaults means that any time a new user goes to the mirror, or whenver all user settings are reset, the custom options will be enabled. This can be useful in cases when it is desirable to have hubs attached by default, to change the default assembly or visibility display, etc.</p> <p> The first step is to create a <a href="#UsrAcct">Session</a> containing all desired display options, hubs, etc. Then a file will be created from within the GBiB that contains the command to create a new MySQL table: <strong>defaultCart</strong>. See the <a href="#Connectwithssh">Connect with ssh</a> section of this page for help logging into your GBiB. Contents of new file <strong>defaultCart.sql</strong>:</p>