623747f9b8345a8cd6470fa2adf14050a2bd7bd0 max Thu Feb 18 06:22:07 2021 -0800 adding knownCds to allways-add table list in hgMirror on gbib, refs #26781 diff --git src/hg/hgMirror/hgMirror src/hg/hgMirror/hgMirror index 5a45735..ce6d349 100755 --- src/hg/hgMirror/hgMirror +++ src/hg/hgMirror/hgMirror @@ -94,31 +94,33 @@ FORCEHIDE = ["intronEst", "cons100way", "cons46way", "ucscRetroAli5", "mrna", "wgEncodeRegDnaseClustered"] # always copy these (small) tables for the current db, if they exist FORCETABLES = ['cytoBand', 'chromInfo', 'cytoBandIdeo', 'kgColor', \ 'knownGene', 'kgXref', 'ensemblLift', 'ucscToEnsembl','wgEncodeRegTfbsCells', \ 'tableList', 'refSeqStatus', 'wgEncodeRegTfbsCellsV3', 'extFile', 'trackDb', 'grp', 'ucscRetroInfo5', "refLink", "ucscRetroSeq5", "ensemblLift", "knownCanonical", 'gbExtFile', 'flyBase2004Xref', # for gencode/knownGene tracks and hg38 in particular "knownToTag", "ncbiRefSeqLink", "ncbiRefSeqCurated", "gtexGeneModel", "gtexGene", "knownAttrs", "seqNcbiRefSeq", # for faster searches 'hgFindSpec', 'ensemblToGeneName', "ucscToINSDC", # these are almost required for searches, common tracks and not too big - "ensGene", "xenoRefGene" + "ensGene", "xenoRefGene", + # added in Feb 2021, necessary now for knownGenes display + "knownCds" ] # always copy these hgFixed tables FORCEFIXED = ['trackVersion'] #FORCEFIXED = ['trackVersion', 'tableList'] # big file table base URL # points to a http directory with <db>/bigFiles.tab files that tell us which bigfile goes to which track #BIGFILETABLEURL = "http://hgwdev.soe.ucsc.edu/~max/browserbox/%s/bigFiles.tab.gz" # %s == db BIGFILETABLEURL = "http://hgdownload.soe.ucsc.edu/goldenpath/%s/database/bigFiles.txt.gz" # cache of hg.conf dict hgConf = None def parseConf(fname):