3a884d87e2f5198d79e8c628fad94112ed4d1a01 max Mon Feb 15 05:48:31 2021 -0800 updating CADD track docs, refs #18492 diff --git src/hg/makeDb/trackDb/human/cadd.ra src/hg/makeDb/trackDb/human/cadd.ra index 8ece27b..588125f 100644 --- src/hg/makeDb/trackDb/human/cadd.ra +++ src/hg/makeDb/trackDb/human/cadd.ra @@ -1,81 +1,85 @@ track caddSuper shortLabel CADD longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions superTrack on show type bed visibility hide group phenDis color 100,130,160 - track caddIns - shortLabel Insertions - longLabel CADD Score: Insertions - label is length of insertion - type bigBed 9 + - parent caddSuper - visibility dense - bigDataUrl /gbdb/$D/cadd/ins.bb - mouseOver Mutation: $change CADD Phred score: $phred - - track caddDel - shortLabel Deletions - longLabel CADD Score: Deletions - label is length of deletion - type bigBed 9 + - parent caddSuper - visibility dense - bigDataUrl /gbdb/$D/cadd/del.bb - mouseOver Mutation: $change CADD Phred score: $phred - track cadd shortLabel CADD longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in to show exact score on mouse over, same basepair = score 0.0) type bigWig compositeTrack on parent caddSuper visibility dense #maxWindowToQuery 500000 group phenDis color 100,130,160 +html caddSuper track caddA shortLabel Mutation: A - longLabel CADD Score: Mutation is A + longLabel CADD 1.6 Score: Mutation is A type bigWig parent cadd on visibility dense bigDataUrl /gbdb/$D/cadd/a.bw maxHeightPixels 128:20:8 viewLimits 0:30 viewLimitsMax 0:100 track caddC shortLabel Mutation: C - longLabel CADD Score: Mutation is C + longLabel CADD 1.6 Score: Mutation is C type bigWig parent cadd on visibility dense bigDataUrl /gbdb/$D/cadd/c.bw maxHeightPixels 128:20:8 viewLimits 0:30 viewLimitsMax 0:100 track caddG shortLabel Mutation: G - longLabel CADD Score: Mutation is G + longLabel CADD 1.6 Score: Mutation is G type bigWig parent cadd on visibility dense bigDataUrl /gbdb/$D/cadd/g.bw maxHeightPixels 128:20:8 viewLimits 0:30 viewLimitsMax 0:100 track caddT shortLabel Mutation: T - longLabel CADD Score: Mutation is T + longLabel CADD 1.6 Score: Mutation is T type bigWig parent cadd on visibility dense bigDataUrl /gbdb/$D/cadd/t.bw maxHeightPixels 128:20:8 viewLimits 0:30 viewLimitsMax 0:100 + +track caddIns +shortLabel Insertions +longLabel CADD 1.6 Score: Insertions - label is length of insertion +type bigBed 9 + +parent caddSuper +visibility dense +bigDataUrl /gbdb/$D/cadd/ins.bb +mouseOver Mutation: $change CADD Phred score: $phred +html caddSuper + +track caddDel +shortLabel Deletions +longLabel CADD 1.6 Score: Deletions - label is length of deletion +type bigBed 9 + +parent caddSuper +visibility dense +bigDataUrl /gbdb/$D/cadd/del.bb +mouseOver Mutation: $change CADD Phred score: $phred +html caddSuper +