50b498ed99557aa0cd1ee5476b51395b0ad07418 dschmelt Wed Mar 17 16:13:31 2021 -0700 Adding news annoucement, link fix for covid, and last minute changes for knownGene refs #26919 diff --git src/hg/htdocs/goldenPath/help/covidBrowserIntro.html src/hg/htdocs/goldenPath/help/covidBrowserIntro.html index 0fbbe31..057c9b8 100755 --- src/hg/htdocs/goldenPath/help/covidBrowserIntro.html +++ src/hg/htdocs/goldenPath/help/covidBrowserIntro.html @@ -205,31 +205,31 @@ height="427"></a> <p class="gbsCaption text-center">The uploaded sequences are highlighted in blue alongside their most closely aligned public sequences. You can investigate genotypes and relationships between samples.</p> </p> <a name="data"></a> <h2>Other tools, downloads, and features</h2> <h3>Custom Tracks, BLAT, Track Hubs</h3> <p> Along with a suite of data tracks, filters, and visualization options for the SARS-CoV-2 genome, the UCSC Genome Browser offers many additional ways to interface with our data. You can upload your data on the reference genome in <a href="../../FAQ/FAQformat.html">nearly any format</a> with our -<a href="../..//cgi-bin/hgCustom">Custom Track tool</a>. If you have unaligned sequence, +<a href="../../cgi-bin/hgCustom">Custom Track tool</a>. If you have unaligned sequence, you can use our <a href="../../cgi-bin/hgBlat">BLAT sequence alignment tool</a> to get coordinates and base-by-base comparison with any reference genome. We also display formatted data as <a href="hgTrackHubHelp.html">Track Hubs</a> and curate a list of user-submitted <a href="../../cgi-bin/hgHubConnect?#publicHubs">Public Track Hubs</a>. </p> <h3>Downloads, Table Browser, JSON API, SQL</h3> <p> As part of our open-source, open-access philosophy, we try to make it as easy as possible for researchers to download entire datasets or filtered subsets. Each track description page has a Data Access section which points users to our main options for data download. For downloading complete datasets, our <a href="http://hgdownload.soe.ucsc.edu/downloads.html#SARS-CoV-2">SARS-CoV-2 download directory</a> provides access to all our source files for transparency and reproducibility. Our <a href="../../cgi-bin/hgTables">Table Browser</a> tool lets users interact with our