dee1b87619f6cb852ae6574a1abed1a019072042 dschmelt Thu Mar 18 14:56:43 2021 -0700 Updated to kg announcement refs #26919 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 5f393c0..2d3c001 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -41,49 +41,46 @@ <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2021 archived news ============= --> <a name="2021"></a> <a name="031721"></a> -<h2>Updated hg38 default gene track to GENCODE v36</h2> +<h2>Mar. 17, 2021 Updated hg38 default gene track to GENCODE v36</h2> <p> We have updated the most recent human genome, GRCh38/hg38, with an updated default gene set, <a href="../cgi-bin/hgTrackUi?db=hg38&g=knownGene">GENCODE v36</a>. This is part of our commitment to keep our annotation data as up-to-date as possible with the most -useful information, all versioned for maximum stability and reproducibility. This geneset +useful information, all versioned for stability and reproducibility. This geneset replaces our previous default, GENCODE v32, with a more recent dataset while retaining all -of the filters, viewing options, and data access abilities. The previous -version can still be viewed in the <a href="../cgi-bin/hgTrackUi?db=hg38&g=wgEncodeGencodeSuper"> -All GENCODE</a> track. You can view the new default geneset at the following link:</p> -<ul> -<li><a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack">GENCODE v36</a></li> -</ul> +of the filters, viewing options, and data access abilities. GENCODE v32 can still be +viewed in the <a href="../cgi-bin/hgTrackUi?db=hg38&g=wgEncodeGencodeSuper"> +All GENCODE</a> track. You can view the new default geneset at the following link: +<a href="../cgi-bin/hgTracks?db=hg38&hideTracks=1&knownGene=pack">GENCODE v36</a></p> + <p> The default gene dataset is called "knownGene" internally at UCSC and is used in many bioinformatics pipelines as a reference geneset. -The GRCh37/hg19 default geneset will stay the same.</p> - -<p> +The GRCh37/hg19 default geneset will stay the same. The UCSC Genome Browser would like to thank the <a href="https://www.gencodegenes.org/" target="_blank">GENCODE consortium</a> and the internal development team at UCSC, including Daniel Schmelter and Brian Raney.</p> <a name="030421"></a> <h2>Mar. 4, 2021 Updated NCBI RefSeq Gene Tracks for 13 organisms</h2> <p> We are pleased to announce a combination of both updated and new <a href="https://www.ncbi.nlm.nih.gov/refseq/" target="_blank"> NCBI RefSeq gene annotation</a> tracks for the following 13 assemblies. Most notably, we have updated both human assemblies and the new mouse assembly.</p><br> <div class="container"> <div class="row"> <div class="col-sm-3">