d63e61cdc4fa118eee44f5074a7f5bf0aeb0f5df gperez2 Fri Mar 19 00:38:12 2021 -0700 Organized the hg19 and hg38 non-default tracks in alphabetical order, refs #19187 diff --git src/hg/makeDb/trackDb/human/trackDb.gtex.ra src/hg/makeDb/trackDb/human/trackDb.gtex.ra index b9f4c03..4aca7e4 100644 --- src/hg/makeDb/trackDb/human/trackDb.gtex.ra +++ src/hg/makeDb/trackDb/human/trackDb.gtex.ra @@ -1,30 +1,29 @@ # GTEx (Genotype Tissue Expression) project tracks # Allele-specific expression include trackDb.gtexAwgAse.ra # Gene expression track gtexGene shortLabel GTEx Gene longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) type bed 6 + html gtexGeneExpr group expression -priority 10.1 maxItems 200 spectrum on visibility hide searchTable gtexGene query select chrom, chromStart, chromEnd, geneId from %s where geneId like '%s%%' termRegex gtex:ENSG[0-9]+(\.[0-9]+)? termPrefix gtex: shortCircuit 1 track gtexTranscExpr shortLabel GTEx Transcript longLabel Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors type bigBarChart barChartLabel Tissue types @@ -48,31 +47,30 @@ \#FFA54F #EE9A00 #8FBC8F #8B1C62 #EE6A50 #FF0000 #CDB79E #EEEE00 \ \#EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 #EEEE00 \ \#EEEE00 #EEEE00 #EEEE00 #EEEE00 #00CDCD #EE82EE #9AC0CD #EED5D2 \ \#EED5D2 #CDB79E #EEC591 #8B7355 #8B7355 #CDAA7D #EED5D2 #B452CD \ \#7A378B #CDB79E #CDB79E #9ACD32 #CDB79E #7A67EE #FFD700 #FFB6C1 \ \#CD9B1D #B4EEB4 #D9D9D9 #3A5FCD #1E90FF #CDB79E #CDB79E #FFD39B \ \#A6A6A6 #008B45 #EED5D2 #EED5D2 #FF00FF barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/cleanGtexMatrix.tab barChartSampleUrl /gbdb/hgFixed/human/expMatrix/cleanGtexSamples.tab barChartMetric median maxLimit 8000 maxItems 300 defaultLabelFields name2, name labelFields name2, name group expression -priority 1.1 # Older, in progress, and experimental track gtexGeneV4 release alpha type bed 6 + shortLabel GTEx Expr V4 longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 2921 samples, 209 donors (V4, Aug 2014) html gtexGeneExprV4 group expression priority 10.1 track gtexGeneV8 shortLabel GTEx Gene V8 longLabel Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)