d63e61cdc4fa118eee44f5074a7f5bf0aeb0f5df
gperez2
  Fri Mar 19 00:38:12 2021 -0700
Organized the hg19 and hg38 non-default tracks in alphabetical order, refs #19187

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 37ad4dc..c7524a7 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -966,433 +966,413 @@
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp141Seq
 snpExceptionDesc snp141ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp141CodingDbSnp,
-priority 6
 
 
 track snp141Flagged
 shortLabel Flagged SNPs(141)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp141Seq
 snpExceptionDesc snp141ExceptionDesc
 defaultGeneTracks knownGene
 type bed 6 +
 chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp141CodingDbSnp,
-priority 18
 
 
 track snp141Mult
 shortLabel Mult. SNPs(141)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 141) That Map to Multiple Genomic Loci
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp141Seq
 snpExceptionDesc snp141ExceptionDesc
 defaultGeneTracks knownGene
 defaultMaxWeight 3
 maxWindowToDraw 10000000
 type bed 6 +
 chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp141CodingDbSnp,
-priority 24
 
 track snp141
 shortLabel All SNPs(141)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 141)
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 chimpOrangMacOrthoTable snp141OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp141CodingDbSnp,
-priority 12
 
 
 track snp142Common
 shortLabel Common SNPs(142)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp142Seq
 snpExceptionDesc snp142ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp142CodingDbSnp,
 html snp142Common_bugFix
-priority 5
 
 
 track snp142Flagged
 shortLabel Flagged SNPs(142)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp142Seq
 snpExceptionDesc snp142ExceptionDesc
 defaultGeneTracks knownGene
 type bed 6 +
 chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp142CodingDbSnp,
 html snp142Flagged_bugFix
-priority 17
 
 track snp142Mult
 shortLabel Mult. SNPs(142)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp142Seq
 snpExceptionDesc snp142ExceptionDesc
 defaultGeneTracks knownGene
 defaultMaxWeight 3
 maxWindowToDraw 10000000
 type bed 6 +
 chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp142CodingDbSnp,
 html snp142Mult_bugFix
-priority 23
 
 
 track snp142
 shortLabel All SNPs(142)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 142)
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 chimpOrangMacOrthoTable snp142OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp142CodingDbSnp,
 html snp142_bugFix
-priority 11
 
 
 track snp144Common
 shortLabel Common SNPs(144)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp144Seq
 snpExceptionDesc snp144ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp144CodingDbSnp,
-priority 4
 
 
 track snp144Flagged
 shortLabel Flagged SNPs(144)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp144Seq
 snpExceptionDesc snp144ExceptionDesc
 defaultGeneTracks knownGene
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp144CodingDbSnp,
-priority 16
 
 track snp144Mult
 shortLabel Mult. SNPs(144)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp144Seq
 snpExceptionDesc snp144ExceptionDesc
 defaultGeneTracks knownGene
 defaultMaxWeight 3
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp144CodingDbSnp,
-priority 22
 
 
 track snp144
 shortLabel All SNPs(144)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 144)
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp144OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp144CodingDbSnp,
-priority 10
 
 
 track snp146Common
 shortLabel Common SNPs(146)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp146Seq
 snpExceptionDesc snp146ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp146CodingDbSnp,
-priority 3
 
 
 track snp146Flagged
 shortLabel Flagged SNPs(146)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp146Seq
 snpExceptionDesc snp146ExceptionDesc
 defaultGeneTracks knownGene
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp146CodingDbSnp,
-priority 15
 
 
 track snp146Mult
 shortLabel Mult. SNPs(146)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp146Seq
 snpExceptionDesc snp146ExceptionDesc
 defaultGeneTracks knownGene
 defaultMaxWeight 3
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp146CodingDbSnp,
-priority 21
 
 
 track snp146
 shortLabel All SNPs(146)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 146)
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp146OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp146CodingDbSnp,
-priority 9
 
 
 track snp147Common
 shortLabel Common SNPs(147)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp147Seq
 snpExceptionDesc snp147ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp147CodingDbSnp,
-priority 2
 
 
 track snp147Flagged
 shortLabel Flagged SNPs(147)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp147Seq
 snpExceptionDesc snp147ExceptionDesc
 defaultGeneTracks knownGene
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp147CodingDbSnp,
-priority 14
 
 
 track snp147Mult
 shortLabel Mult. SNPs(147)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 snpSeq snp147Seq
 snpExceptionDesc snp147ExceptionDesc
 defaultGeneTracks knownGene
 defaultMaxWeight 3
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp147CodingDbSnp,
-priority 20
 
 
 track snp147
 shortLabel All SNPs(147)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 147)
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP:
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp147OrthoPt4Pa2Rm3
 chimpDb panTro4
 orangDb ponAbe2
 macaqueDb rheMac3
 hapmapPhase III
 codingAnnotations snp147CodingDbSnp,
-priority 8
 
 
 track snp149Common
 shortLabel Common SNPs(149)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 149) Found in >= 1% of Samples
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp149Seq
 snpExceptionDesc snp149ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
@@ -1468,174 +1448,166 @@
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp150Seq
 snpExceptionDesc snp150ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp150CodingDbSnp,
-priority 1
 
 track snp150Flagged
 shortLabel Flagged SNPs(150)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp150Seq
 snpExceptionDesc snp150ExceptionDesc
 defaultGeneTracks knownGene
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp150CodingDbSnp,
-priority 13
 
 track snp150Mult
 shortLabel Mult. SNPs(150)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp150Seq
 snpExceptionDesc snp150ExceptionDesc
 defaultGeneTracks knownGene
 defaultMaxWeight 3
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp150CodingDbSnp,
-priority 19
 
 track snp150
 shortLabel All SNPs(150)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 150)
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp150OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp150CodingDbSnp,
-priority 7
 
 
 track snp151Common
 shortLabel Common SNPs(151)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp151Seq
 snpExceptionDesc snp151ExceptionDesc
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp151CodingDbSnp,
-priority 0.9
 
 track snp151Flagged
 shortLabel Flagged SNPs(151)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp151Seq
 snpExceptionDesc snp151ExceptionDesc
 defaultGeneTracks knownGene
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp151CodingDbSnp,
-priority 12.9
 
 track snp151Mult
 shortLabel Mult. SNPs(151)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 snpSeq snp151Seq
 snpExceptionDesc snp151ExceptionDesc
 defaultGeneTracks knownGene
 defaultMaxWeight 3
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp151CodingDbSnp,
-priority 18.9
 
 track snp151
 shortLabel All SNPs(151)
 longLabel Simple Nucleotide Polymorphisms (dbSNP 151)
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=$$
 urlLabel dbSNP: 
 defaultGeneTracks knownGene
 maxWindowToDraw 10000000
 type bed 6 +
 trackHandler snp125
 chimpOrangMacOrthoTable snp151OrthoPt5Pa2Rm8
 chimpDb panTro5
 orangDb ponAbe2
 macaqueDb rheMac8
 hapmapPhase III
 codingAnnotations snp151CodingDbSnp,
-priority 6.9
 
 track dbSnp152
 shortLabel All dbSNP (152)
 longLabel Short Genetic Variants from dbSNP release 152
 bigDataUrl /gbdb/$D/snp/dbSnp152.bb
 detailsTabUrls _dataOffset=/gbdb/hgFixed/dbSnp/dbSnp152Details.tab.gz
 group varRep
 visibility hide
 url https://www.ncbi.nlm.nih.gov/snp/$$
 urlLabel dbSNP: 
 type bigDbSnp
 freqSourceOrder 1000Genomes,GnomAD_exomes,TOPMED,GnomAD,ExAC,GoESP,ALSPAC,TWINSUK,Estonian
 maxWindowToDraw 1000000
 classFilterValues snv,mnv,ins,del,delins,identity
 classFilterType multipleListOr