7c11083c038619e6d2d3fa03f216b98570be0668
markd
  Sun Mar 14 14:23:24 2021 -0700
clean up a couple of things from VM26 import

diff --git src/hg/makeDb/doc/mm39/gencode.txt src/hg/makeDb/doc/mm39/gencode.txt
index e1cef52..2063667 100644
--- src/hg/makeDb/doc/mm39/gencode.txt
+++ src/hg/makeDb/doc/mm39/gencode.txt
@@ -17,24 +17,25 @@
     # If being pushed public, update 'Release Notes' in
     # mouse/mm39/wgEncodeGencodeSuper.html
 
     # edit human/mm39/trackDb.gencode.ra to add new .ra file include
     jkmake DBS=mm39
 
     ## only if being pushed to RR:
     # edit all.joiner to add ~/tmp/gencodeVM26.joiner
     # verify with:
     pushd /hive/data/genomes/mm39/bed/gencodeVM26
     make  -f ~/kent/src/hg/makeDb/outside/gencode/gencodeLoad.mk joinerCheck
 
        Error: 55597 of 140725 elements (39.508%) of mm39.wgEncodeGencodeAttrsVM26.transcriptId are not in key wgEncodeGencodeExonSupportVM26.transcriptId line 5880 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
        Error: 55597 of 140725 elements (39.508%) of mm39.wgEncodeGencodeAttrsVM26.transcriptId are not in key wgEncodeGencodeExonSupportVM26.transcriptId line 5880 of /cluster/home/markd/kent/src/hg/makeDb/schema/all.joiner
 
-    # however, these are not currently used by the browser, so modify joiner check
+    # however, these are not currently used by the browser, so modify joiner check. Check
+    # with GENCODE is this is expected, might be a cleanup on move to mm39
 
 
     # check tracks in browser sandbox
     # commit all
     make DBS=mm39 alpha
     # if pushing public: add ticket and MARK QA READY
 
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