7c11083c038619e6d2d3fa03f216b98570be0668 markd Sun Mar 14 14:23:24 2021 -0700 clean up a couple of things from VM26 import diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 3daeff2..ca9ac81 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -24,36 +24,37 @@ export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## preRelease = no #preRelease = yes #db = hg38 #db = hg19 -db = mm39 +#db = mm39 #db = mm10 ifeq (${db},mm10) grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 + backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 ver = M26 prevVer = gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation else ifeq (${db},hg38) grcRefAssembly = GRCh38 ver = 37