56405fd76d2760549a7fe511384e534f240ac79e
angie
  Wed Mar 3 18:45:30 2021 -0800
Clean up a bit when done.

diff --git src/hg/utils/otto/sarscov2phylo/getNcbi.sh src/hg/utils/otto/sarscov2phylo/getNcbi.sh
index bfc5d26..39d03ea 100755
--- src/hg/utils/otto/sarscov2phylo/getNcbi.sh
+++ src/hg/utils/otto/sarscov2phylo/getNcbi.sh
@@ -69,15 +69,19 @@
 $scriptDir/gbMetadataAddBioSample.pl gb.bioSample.tab ncbi_dataset.tsv \
     > ncbi_dataset.plusBioSample.tsv
 
 # Make a file for joining collection date with ID:
 tawk '$3 != "" {print $1, $3;}' ncbi_dataset.plusBioSample.tsv \
 | sort > gbToDate
 
 # Replace FASTA headers with reconstructed names from enhanced metadata.
 time cleanGenbank < ncbi_dataset/data/genomic.fna \
 | $scriptDir/fixNcbiFastaNames.pl ncbi_dataset.plusBioSample.tsv \
 | xz -T 50 \
     > genbank.fa.xz
 
 rm -f $ottoDir/ncbi.latest
 ln -s ncbi.$today $ottoDir/ncbi.latest
+
+# Clean up
+rm -r ncbi_dataset
+nice xz all.bioSample.* &