50d655bec99c9e0a4f201ced82513d4c936af575
hiram
  Wed Mar 3 20:14:44 2021 -0800
now creating useOneFile hub.txt files for each individual hub and separate files for download and adding blat servers for hubs on hgwdev refs #26658

diff --git src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
index 366ac72..4657d2c 100755
--- src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
+++ src/hg/makeDb/doc/asmHubs/sendToHgdownload.sh
@@ -18,18 +18,24 @@
 ### printf "# badLinks: %s\n" "${badLinks}"
 
 if [ "${badLinks}" -gt 0 ]; then
   printf "ERROR: missing symlink targets:\n" 1>&2
   find "/hive/data/genomes/asmHubs/${dirPath}" -type l -lname \* \
     | xargs --no-run-if-empty ls -lL > /dev/null
   exit 255
 fi
 
 export destDir="/mirrordata/hubs/${dirPath}"
 printf "# srcDir: %s\n" "${srcDir}"
 printf "# destDir: %s\n" "${destDir}"
 
 ssh qateam@hgdownload.soe.ucsc.edu "mkdir -p ${destDir}" 2>&1 | grep -v "X11 forwarding request" || true
 printf "# successful mkdir\n"
-rsync --delete --stats -a -L -P "${srcDir}/" "qateam@hgdownload.soe.ucsc.edu:${destDir}/" \
+# genomes.txt obsolete now with the single file
+ssh qateam@hgdownload.soe.ucsc.edu "rm ${destDir}/genomes.txt" 2>&1 | egrep -v "cannot remove|X11 forwarding request" || true
+# ssh qateam@hgdownload.soe.ucsc.edu "rm ${destDir}/html/*.description.html" 2>&1 | grep -v "X11 forwarding request" || true
+rsync --delete --exclude="hub.txt" --exclude="download.hub.txt" --stats -a -L -P "${srcDir}/" "qateam@hgdownload.soe.ucsc.edu:${destDir}/" \
+  2>&1 | grep -v "X11 forwarding request" || true
+# the new single file hub genome trackDb file:
+rsync --stats -a -L -P "${srcDir}/download.hub.txt" "qateam@hgdownload.soe.ucsc.edu:${destDir}/hub.txt" \
   2>&1 | grep -v "X11 forwarding request" || true
 printf "# successful rsync\n"