50d655bec99c9e0a4f201ced82513d4c936af575 hiram Wed Mar 3 20:14:44 2021 -0800 now creating useOneFile hub.txt files for each individual hub and separate files for download and adding blat servers for hubs on hgwdev refs #26658 diff --git src/hg/makeDb/doc/asmHubs/trackData.pl src/hg/makeDb/doc/asmHubs/trackData.pl index 55b31ca..c717a12 100755 --- src/hg/makeDb/doc/asmHubs/trackData.pl +++ src/hg/makeDb/doc/asmHubs/trackData.pl @@ -157,33 +157,31 @@ print <<"END" <!DOCTYPE HTML 4.01 Transitional> <!--#set var="TITLE" value="$Name genomes assembly hubs, track statistics" --> <!--#set var="ROOT" value="../.." --> <!--#include virtual="\$ROOT/inc/gbPageStartHardcoded.html" --> <h1>$Name Genomes assembly hubs, track statistics</h1> <p> Assemblies from NCBI/Genbank/Refseq sources, $subSetMessage. </p> END } my $indexUrl = "index"; - $indexUrl = "testIndex" if ($testOutput); my $asmStats = "asmStats"; - $asmStats = "testAsmStats" if ($testOutput); print <<"END" <h3>See also: <a href='$indexUrl.html'>hub access</a>, <a href='$asmStats.html'>assembly statistics</a></h3><br> <h3>Data resource links</h3> NOTE: <em>Click on the column headers to sort the table by that column</em><br> The <em>link to genome browser</em> will attach only that single assembly to the genome browser.<br> The numbers are: item count (percent coverage)<br> Except for the gc5Base column which is: overall GC % average (percent coverage) END } # sub startHtml() # order of columns in the table # eliminated the ncbiGene track my @trackList = qw(ncbiRefSeq xenoRefGene augustus ensGene gc5Base allGaps assembly rmsk simpleRepeat windowMasker cpgIslandExtUnmasked);