82e20c618a9b836885c82fd2d9fdbe941d3955e9
hiram
  Tue Mar 2 11:02:47 2021 -0800
completed liftOvers to xenTro10 refs #24693

diff --git src/hg/makeDb/doc/xenTro7.txt src/hg/makeDb/doc/xenTro7.txt
index 5f0e542..86405e2 100644
--- src/hg/makeDb/doc/xenTro7.txt
+++ src/hg/makeDb/doc/xenTro7.txt
@@ -607,30 +607,48 @@
 ##############################################################################
 # LIFTOVER TO xenTro9 (DONE - 2017-03-28 - Hiram)
     ssh hgwdev
     mkdir /hive/data/genomes/xenTro7/bed/blat.xenTro9.2017-03-28
     cd /hive/data/genomes/xenTro7/bed/blat.xenTro9.2017-03-28
     time (doSameSpeciesLiftOver.pl -verbose=2 -buildDir=`pwd` \
 	-ooc=/hive/data/genomes/xenTro7/jkStuff/xenTro7.11.ooc \
         -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
          xenTro7 xenTro9) > do.log 2>&1
     # real    488m42.323s
 
     # verify the convert link on the test browser is now active from xenTro7 to
     # xenTro9
 
 #########################################################################
+# LIFTOVER TO xenTro10 (DONE - 2021-02-23 - Hiram)
+    ssh hgwdev
+    mkdir /hive/data/genomes/xenTro7/bed/blat.xenTro10.2021-02-23
+    cd /hive/data/genomes/xenTro7/bed/blat.xenTro10.2021-02-23
+    doSameSpeciesLiftOver.pl -debug -verbose=2 -buildDir=`pwd` \
+	-ooc=/hive/data/genomes/xenTro7/jkStuff/xenTro7.11.ooc \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+         xenTro7 xenTro10
+    time (doSameSpeciesLiftOver.pl -verbose=2 -buildDir=`pwd` \
+	-ooc=/hive/data/genomes/xenTro7/jkStuff/xenTro7.11.ooc \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+         xenTro7 xenTro10) > do.log 2>&1
+    # real    474m55.654s
+
+    # verify the convert link on the test browser is now active from xenTro7 to
+    # xenTro10
+
+#########################################################################
 # Tibetan frog/nanPar1 Lastz run  (DONE - 2015-03-24 - Hiram)
     screen -S nanPar1    # use screen to manage this long running job
     mkdir -p /hive/data/genomes/xenTro7/bed/lastzPhyCat1.2014-03-24/tuning
     cd  /hive/data/genomes/xenTro7/bed/lastzPhyCat1.2014-03-24/tuning
 
     hgsql -N -e 'select * from genscan;' nanPar1 | cut -f2- \
        | sort > nanPar1.genes.gp
     hgsql -N -e 'select * from genscan;' xenTro7 | cut -f2- \
        | sort > xenTro7.genes.gp
 
     getRnaPred -peptides -genomeSeqs=/hive/data/genomes/xenTro7/xenTro7.2bit \
        xenTro7 xenTro7.genes.gp all xenTro7.genes.pep
     getRnaPred -peptides -genomeSeqs=/hive/data/genomes/nanPar1/nanPar1.2bit \
        nanPar1 nanPar1.genes.gp all nanPar1.genes.pep