82e20c618a9b836885c82fd2d9fdbe941d3955e9
hiram
  Tue Mar 2 11:02:47 2021 -0800
completed liftOvers to xenTro10 refs #24693

diff --git src/hg/makeDb/doc/xenTro9/initialBuild.txt src/hg/makeDb/doc/xenTro9/initialBuild.txt
index 5e04b5f..59eae45 100644
--- src/hg/makeDb/doc/xenTro9/initialBuild.txt
+++ src/hg/makeDb/doc/xenTro9/initialBuild.txt
@@ -791,15 +791,33 @@
     #   check for errors in stderr.out, some are OK, e.g.:
     # WARNING: hgwdev does not have /gbdb/xenTro9/wib/gc5Base.wib
     # WARNING: hgwdev does not have /gbdb/xenTro9/wib/quality.wib
     # WARNING: hgwdev does not have /gbdb/xenTro9/bbi/quality.bw
     # WARNING: xenTro9 does not have seq
     # WARNING: xenTro9 does not have extFile
 
     #   copy it to hgwbeta
     scp -p xenTro9.pushQ.sql qateam@hgwbeta:/tmp/
     ssh qateam@hgwbeta "./bin/x86_64/hgsql qapushq < /tmp/xenTro9.pushQ.sql"
 
     #   in that pushQ entry walk through each entry and see if the
     #   sizes will set properly
 
 #########################################################################
+# LIFTOVER TO xenTro10 (DONE - 2021-02-22 - Hiram)
+    ssh hgwdev
+    mkdir /hive/data/genomes/xenTro9/bed/blat.xenTro10.2021-02-22
+    cd /hive/data/genomes/xenTro9/bed/blat.xenTro10.2021-02-22
+    doSameSpeciesLiftOver.pl -debug -verbose=2 -buildDir=`pwd` \
+	-ooc=/hive/data/genomes/xenTro9/jkStuff/xenTro9.11.ooc \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+         xenTro9 xenTro10
+    time (doSameSpeciesLiftOver.pl -verbose=2 -buildDir=`pwd` \
+	-ooc=/hive/data/genomes/xenTro9/jkStuff/xenTro9.11.ooc \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+         xenTro9 xenTro10) > do.log 2>&1 &
+    # real    575m48.416s
+
+    # verify the convert link on the test browser is now active from xenTro9 to
+    # xenTro10
+
+#########################################################################