126c41813aad0393feee37ce4040a686f52a4ca3 hiram Tue Mar 2 07:57:57 2021 -0800 adding xenTro10 definition refs #24693 diff --git src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra index 75f3441..41c11fe 100644 --- src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra +++ src/hg/makeDb/trackDb/trackDb.chainNet.sarcopterygii.ra @@ -1,847 +1,901 @@ ################################################################ # chrPic2 - Painted turtle - Chrysemys picta bellii - vertebrate - testudines - taxId: 8478 ################################################################ track chainNetChrPic2 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 195.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 89,-156,-79,-178,-156,100,-183,-79,-79,-183,100,-156,-178,-79,-156,89 matrixHeader A, C, G, T otherDb chrPic2 chainMinScore 3000 chainLinearGap medium spectrum on html chainNet track chainNetChrPic2Viewchain shortLabel Chain view chain visibility pack parent chainNetChrPic2 spectrum on track chainChrPic2 parent chainNetChrPic2Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chrPic2 html chainNet track chainNetChrPic2Viewnet shortLabel Net view net visibility dense parent chainNetChrPic2 track netChrPic2 parent chainNetChrPic2Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chrPic2 chainChrPic2 html chainNet ################################################################ # chrPic1 - Painted turtle - Chrysemys picta bellii - vertebrate - testudines - 4405 ################################################################ track chainNetChrPic1 release alpha compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 195.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 89,-156,-79,-178,-156,100,-183,-79,-79,-183,100,-156,-178,-79,-156,89 matrixHeader A, C, G, T otherDb chrPic1 chainMinScore 3000 chainLinearGap medium spectrum on html chainNet track chainNetChrPic1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetChrPic1 spectrum on track chainChrPic1 release alpha parent chainNetChrPic1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain chrPic1 html chainNet track chainNetChrPic1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetChrPic1 track netChrPic1 release alpha parent chainNetChrPic1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign chrPic1 chainChrPic1 html chainNet ################################################################ # allMis1 - American alligator - Alligator mississippiensis - vertebrate - sauria - 4380 ################################################################ track chainNetAllMis1 release alpha compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 213.66 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 100,-170,-114,-276,-170,58,-98,-114,-114,-98,58,-170,-276,-114,-170,100 matrixHeader A, C, G, T otherDb allMis1 chainMinScore 1000 chainLinearGap loose spectrum on html chainNet track chainNetAllMis1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetAllMis1 spectrum on track chainAllMis1 release alpha parent chainNetAllMis1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain allMis1 html chainNet track chainNetAllMis1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetAllMis1 track netAllMis1 release alpha parent chainNetAllMis1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign allMis1 chainAllMis1 html chainNet ################################################################ # apaSpi1 - Spiny softshell turtle - Apalone spinifera - vertebrate - testudines - 4403 ################################################################ track chainNetApaSpi1 release alpha compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 562.80 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 matrixHeader A, C, G, T otherDb apaSpi1 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetApaSpi1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetApaSpi1 spectrum on track chainApaSpi1 release alpha parent chainNetApaSpi1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain apaSpi1 html chainNet track chainNetApaSpi1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetApaSpi1 track netApaSpi1 release alpha parent chainNetApaSpi1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign apaSpi1 chainApaSpi1 html chainNet ################################################################ # pelSin1 - Chinese softshell turtle - Pelodiscus sinensis - vertebrate - testudines - 4400 ################################################################ track chainNetPelSin1 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 564.05 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 matrixHeader A, C, G, T otherDb pelSin1 chainMinScore 3000 chainLinearGap medium spectrum on html chainNet track chainNetPelSin1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetPelSin1 spectrum on track chainPelSin1 release alpha parent chainNetPelSin1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain pelSin1 html chainNet track chainNetPelSin1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetPelSin1 track netPelSin1 release alpha parent chainNetPelSin1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign pelSin1 chainPelSin1 html chainNet ################################################################ # allSin1 - Chinese alligator - Alligator sinensis - vertebrate - sauria - 4382 ################################################################ track chainNetAllSin1 release alpha compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 565.30 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T otherDb allSin1 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetAllSin1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetAllSin1 spectrum on track chainAllSin1 release alpha parent chainNetAllSin1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain allSin1 html chainNet track chainNetAllSin1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetAllSin1 track netAllSin1 release alpha parent chainNetAllSin1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign allSin1 chainAllSin1 html chainNet ################################################################ # cheMyd1 - Green seaturtle - Chelonia mydas - vertebrate - testudines - 4395 ################################################################ track chainNetCheMyd1 release alpha compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 565.30 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 matrixHeader A, C, G, T otherDb cheMyd1 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetCheMyd1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetCheMyd1 spectrum on track chainCheMyd1 release alpha parent chainNetCheMyd1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain cheMyd1 html chainNet track chainNetCheMyd1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetCheMyd1 track netCheMyd1 release alpha parent chainNetCheMyd1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign cheMyd1 chainCheMyd1 html chainNet ################################################################ # calMil1 - Elephant shark - Callorhinchus milii - vertebrate - 7868 ################################################################ track chainNetCalMil1 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 590.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T otherDb calMil1 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetCalMil1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetCalMil1 spectrum on track chainCalMil1 release alpha parent chainNetCalMil1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain calMil1 html chainNet track chainNetCalMil1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetCalMil1 track netCalMil1 release alpha parent chainNetCalMil1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign calMil1 chainCalMil1 html chainNet ################################################################ # ambMex1 - Axolotl - Ambystoma mexicanum - vertebrate - amphibia - taxId 8296 ################################################################ track chainNetAmbMex1 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 543.63 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 matrixHeader A, C, G, T otherDb ambMex1 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetAmbMex1Viewchain shortLabel Chain view chain visibility pack parent chainNetAmbMex1 spectrum on track chainAmbMex1 parent chainNetAmbMex1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain ambMex1 html chainNet track chainNetAmbMex1Viewnet shortLabel Net view net visibility dense parent chainNetAmbMex1 track netAmbMex1 parent chainNetAmbMex1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign ambMex1 chainAmbMex1 html chainNet ################################################################ # nanPar1 - Tibetan frog - Nanorana parkeri - vertebrate - amphibia - 125878 ################################################################ track chainNetNanPar1 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 590.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 matrixHeader A, C, G, T otherDb nanPar1 chainMinScore 1000 chainLinearGap loose spectrum on html chainNet track chainNetNanPar1Viewchain shortLabel Chain view chain visibility pack parent chainNetNanPar1 spectrum on track chainNanPar1 parent chainNetNanPar1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain nanPar1 html chainNet track chainNetNanPar1Viewnet shortLabel Net view net visibility dense parent chainNetNanPar1 track netNanPar1 parent chainNetNanPar1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign nanPar1 chainNanPar1 html chainNet ################################################################ # xenLae2 - African clawed frog - Xenopus laevis - vertebrate - amphibia - taxId 8355 ################################################################ track chainNetXenLae2 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 590.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T otherDb xenLae2 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetXenLae2Viewchain shortLabel Chain view chain visibility pack parent chainNetXenLae2 spectrum on track chainXenLae2 parent chainNetXenLae2Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenLae2 html chainNet track chainNetXenLae2Viewnet shortLabel Net view net visibility dense parent chainNetXenLae2 track netXenLae2 parent chainNetXenLae2Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenLae2 chainXenLae2 html chainNet ################################################################ +# xenTro10 - Frog (X. tropicalis) - Xenopus tropicalis - amphibia - taxId 8364 +################################################################ +track chainNetXenTro10 +compositeTrack on +shortLabel $o_Organism Chain/Net +longLabel $o_Organism ($o_date), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 590.3 +color 0,0,0 +altColor 255,255,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 +matrixHeader A, C, G, T +otherDb xenTro10 +chainMinScore 5000 +chainLinearGap loose +spectrum on +html chainNet + + track chainNetXenTro10Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetXenTro10 + spectrum on + + track chainXenTro10 + parent chainNetXenTro10Viewchain + subGroups view=chain + shortLabel $o_Organism Chain + longLabel $o_Organism ($o_date) Chained Alignments + type chain xenTro10 + html chainNet + + track chainNetXenTro10Viewnet + shortLabel Net + view net + visibility dense + parent chainNetXenTro10 + + track netXenTro10 + parent chainNetXenTro10Viewnet + subGroups view=net + shortLabel $o_Organism Net + longLabel $o_Organism ($o_date) Alignment Net + type netAlign xenTro10 chainXenTro10 + html chainNet + +################################################################ # xenTro9 - Frog (X. tropicalis) - Xenopus tropicalis - amphibia - taxId 8364 ################################################################ track chainNetXenTro9 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 590.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T otherDb xenTro9 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetXenTro9Viewchain shortLabel Chain view chain visibility pack parent chainNetXenTro9 spectrum on track chainXenTro9 parent chainNetXenTro9Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro9 html chainNet track chainNetXenTro9Viewnet shortLabel Net view net visibility dense parent chainNetXenTro9 track netXenTro9 parent chainNetXenTro9Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro9 chainXenTro9 html chainNet ################################################################ # xenTro7 - Frog (X. tropicalis) - Xenopus tropicalis - amphibia - 4439 ################################################################ track chainNetXenTro7 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 590.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T otherDb xenTro7 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetXenTro7Viewchain shortLabel Chain view chain visibility pack parent chainNetXenTro7 spectrum on track chainXenTro7 parent chainNetXenTro7Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain xenTro7 html chainNet track chainNetXenTro7Viewnet shortLabel Net view net visibility dense parent chainNetXenTro7 track netXenTro7 parent chainNetXenTro7Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign xenTro7 chainXenTro7 html chainNet ################################################################ # thaSir1 - Garter snake (Thamnophis sirtalis) - vertebrate - tetrapoda - taxId 35019 ################################################################ track chainNetThaSir1 compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 590.3 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T otherDb thaSir1 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetThaSir1Viewchain shortLabel Chain view chain visibility pack parent chainNetThaSir1 spectrum on track chainThaSir1 parent chainNetThaSir1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain thaSir1 html chainNet track chainNetThaSir1Viewnet shortLabel Net view net visibility dense parent chainNetThaSir1 track netThaSir1 parent chainNetThaSir1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign thaSir1 chainThaSir1 html chainNet ################################################################ # letCam1 - Arctic lamprey - Lethenteron camtschaticum - vertebrate - hyperoartia - 4820 ################################################################ track chainNetLetCam1 release alpha compositeTrack on shortLabel $o_Organism Chain/Net longLabel $o_Organism ($o_date), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno noInherit on priority 646.96 color 0,0,0 altColor 255,255,0 type bed 3 sortOrder view=+ matrix 16 91,-90,-25,-100,-90,100,-100,-25,-25,-100,100,-90,-100,-25,-90,91 matrixHeader A, C, G, T otherDb letCam1 chainMinScore 5000 chainLinearGap loose spectrum on html chainNet track chainNetLetCam1Viewchain release alpha shortLabel Chain view chain visibility pack parent chainNetLetCam1 spectrum on track chainLetCam1 release alpha parent chainNetLetCam1Viewchain subGroups view=chain shortLabel $o_Organism Chain longLabel $o_Organism ($o_date) Chained Alignments type chain letCam1 html chainNet track chainNetLetCam1Viewnet release alpha shortLabel Net view net visibility dense parent chainNetLetCam1 track netLetCam1 release alpha parent chainNetLetCam1Viewnet subGroups view=net shortLabel $o_Organism Net longLabel $o_Organism ($o_date) Alignment Net type netAlign letCam1 chainLetCam1 html chainNet