a2819277576ffc91069261a03b358213afe2cb3b markd Wed Feb 3 15:30:27 2021 -0800 allow gfPcr to query dynamic servers diff --git src/gfClient/gfClient.c src/gfClient/gfClient.c index 94942ec..9dba8b9 100644 --- src/gfClient/gfClient.c +++ src/gfClient/gfClient.c @@ -70,31 +70,31 @@ " 90 for nucleotide searches, 25 for protein or translated\n" " protein searches.\n" " -out=type Controls output file format. Type is one of:\n" " psl - Default. Tab-separated format without actual sequence\n" " pslx - Tab-separated format with sequence\n" " axt - blastz-associated axt format\n" " maf - multiz-associated maf format\n" " sim4 - similar to sim4 format\n" " wublast - similar to wublast format\n" " blast - similar to NCBI blast format\n" " blast8- NCBI blast tabular format\n" " blast9 - NCBI blast tabular format with comments\n" " -maxIntron=N Sets maximum intron size. Default is %d.\n" " -genome=name When using a dynamic gfServer, The genome name is used to \n" " find the data files relative to the dynamic gfServer root, named \n" - " in the form $genome.2bit, $genome.untrans.gfidx, and $genome.trans.gfidx, \n" + " in the form $genome.2bit, $genome.untrans.gfidx, and $genome.trans.gfidx\n" " -genomeDataDir=path\n" " When using a dynamic gfServer, this is the dynamic gfServer root directory\n" " that contained the genome data files. Defaults to being the root directory.\n" " \n", gfVersion, ffIntronMaxDefault); exit(-1); } struct gfOutput *gvo; void gfClient(char *hostName, char *portName, char *tSeqDir, char *inName, char *outName, char *tTypeName, char *qTypeName) /* gfClient - A client for the genomic finding program that produces a .psl file. */ {