f683064dc6a998206665b484790ef9d561e6c8a7 markd Sat Dec 5 22:42:53 2020 -0800 initial conversion to gfServer connection to object diff --git src/gfClient/makefile src/gfClient/makefile index 022fc56..3e8bb65 100644 --- src/gfClient/makefile +++ src/gfClient/makefile @@ -1,5 +1,20 @@ kentSrc = .. A = gfClient preMyLibs += ../lib/$(MACHTYPE)/jkOwnLib.a include $(kentSrc)/inc/userApp.mk L += -lm $(SOCKETLIB) + + +hg38BlatServer = blat1d +hg38BlatPort = 17903 +hg38GenomeDir = /hive/data/genomes/hg38 +testCases = AB000095 AB000220 repeat test1 test2 test3 + +test:: ${testCases:%=%.test} + +%.test: + @mkdir -p output + ${BINDIR}/gfClient -nohead ${hg38BlatServer} ${hg38BlatPort} ${hg38GenomeDir} $*.fa output/$*.psl + +clean:: + rm -rf output