3c5f6de8a9739eb8ddaf1cb233460e0bba9e5321
markd
  Fri Dec 11 21:32:23 2020 -0800
fixed documention issues

diff --git src/gfServer/design.txt src/gfServer/design.txt
index 3aa03fc..dd7f7ba 100644
--- src/gfServer/design.txt
+++ src/gfServer/design.txt
@@ -9,40 +9,40 @@
 
 The dynamic mode of gfServer pre-indexes a genome and saves the index to a
 file. When the server starts, the index is map into gfServer's virtual memory
 and accessed directly. If the index has recently been accessed, it will still
 be in memory. If not, it is paged into memory.
 
 Dynamic gfServer runs via the xinetd super-server. When a client connects to
 xinetd, it starts a gfServer process to handle the request. The number of
 parallel process can be limited in the xinetd configuration. The server is
 given a root directory, and each request is passed a directory (genomeDataDir)
 relative to the root and a genome name. The genomeDataDir contains the 2bit
 file, translates and untranslated indices for the genome, and must follow this
 naming convention:
 
      $rootdir/$genomeDataDir/$genome.2bit
-          $rootdir/$genomeDataDir/$genome.untrans.gfidx\n"
-               $rootdir/$genomeDataDir/$genome.trans.gfidx\n"
+     $rootdir/$genomeDataDir/$genome.untrans.gfidx
+     $rootdir/$genomeDataDir/$genome.trans.gfidx
 
 All search parameters, such as tileSize, are store in the index file and can
 not be changed at runtime.
 
 To allow the index file mapping into virtual memory at any address, they
 contain offsets and arrays, not pointers.  The file starts with a header,
 defined by struct genoFindIndexFileHdr in jkOwnLib/genoFind.c.
 
 Untranslated indexes have a single set of hash arrays, and translated indexes
 contain six sets of hash arrays. Each set of hash arrays starts with a section
 defined by struct genoFindFileHdr.
 
 When an index is opened, the entire file is mapped into virtual memory using
 the mmap system call, and a struct genoFindIndex object build with points into
 the file's address space.  A madvise system call informs the kernel that the
 entire file will be accessed randomly.
 
 The static server protocol only handles one command per connection. A
-translated DNA query is implemented as six requires to the server. To
-implement the "I'm feeling luckly", hgBlats makes an addition status query. To
+translated DNA query is implemented as six requests to the server. To
+implement the "I'm feeling luckly", hgBlat makes an addition status query. To
 avoid loading the index multiple time for a given client task, gfServer
 supports multiple commands over a single connection.