a74c645505a135d5c1e923afe477cdeb9c15bded markd Wed Jul 8 22:27:42 2020 -0700 added including multiple container directoies in genome dir path to gfServer diff --git src/gfServer/tests/dynTester src/gfServer/tests/dynTester index 0af4fa7..bd76cb5 100755 --- src/gfServer/tests/dynTester +++ src/gfServer/tests/dynTester @@ -10,31 +10,31 @@ debug = False valGrind = False def parseArgs(): usage = """Run a test of qfServer dynserver""" parser = argparse.ArgumentParser(description=usage) parser.add_argument('--debug', action="store_true", default=False, help="enable debug tracing") parser.add_argument('--valgrind', action="store_true", default=False, help="run valgrind on gfServer without to valgrind.out") parser.add_argument('rootDir', type=str, help="data root directory") parser.add_argument('queryType', type=str, choices=("query", "protQuery", "transQuery"), help="query request: query, protQuery, or transQuery") parser.add_argument('genome', type=str, - help="genome name") + help="genome name, can include containing dirs") parser.add_argument('queryFa', type=str, help="query fasta") parser.add_argument('resultsOut', type=str, help="out is saved here for checking ") args = parser.parse_args() global debug, valgrind debug = args.debug valgrind = args.valgrind return args gfSignature = "0ddf270562684f29" def readFastaSeqsFh(faFh): """read from one sequence from fasta""" seqs = []