a74c645505a135d5c1e923afe477cdeb9c15bded markd Wed Jul 8 22:27:42 2020 -0700 added including multiple container directoies in genome dir path to gfServer diff --git src/gfServer/tests/testDynServerPerSeqMax src/gfServer/tests/testDynServerPerSeqMax index 44a7c52..3d59fa3 100755 --- src/gfServer/tests/testDynServerPerSeqMax +++ src/gfServer/tests/testDynServerPerSeqMax @@ -1,15 +1,18 @@ #!/bin/bash -e +testName=$(basename $0) + # build index -gfDir=output/rootDynServerPerSeqmax/crea +gfRootDir=output/${testName}_root +gfDir=${gfRootDir}/crea rm -rf $gfDir mkdir -p $gfDir cp -f input/creaGeno.2bit $gfDir/crea.2bit gfServer index $gfDir/crea.untrans.gfidx $gfDir/crea.2bit >/dev/null echo "crea.2bit:hCreaGeno" >$gfDir/crea.perseqmax echo "crea.2bit:mCreatGeno2" >>$gfDir/crea.perseqmax # test query -./dynTester $(dirname $gfDir) query crea input/crea.mrna output/testDynServer.out -diff expected/testDynServer.out output/testDynServer.out +./dynTester $gfRootDir query crea input/crea.mrna output/${testName}.out +diff expected/${testName}.out output/${testName}.out