a74c645505a135d5c1e923afe477cdeb9c15bded markd Wed Jul 8 22:27:42 2020 -0700 added including multiple container directoies in genome dir path to gfServer diff --git src/gfServer/tests/testDynServerWithDir src/gfServer/tests/testDynServerWithDir new file mode 100755 index 0000000..30cd4b6 --- /dev/null +++ src/gfServer/tests/testDynServerWithDir @@ -0,0 +1,16 @@ +#!/bin/bash -e + +testName=$(basename $0) + +# build index +gfRootDir=output/${testName}_root +gfDir=${gfRootDir}/extra/stuff/crea +rm -rf $gfDir +mkdir -p $gfDir +cp -f input/creaGeno.2bit $gfDir/crea.2bit +gfServer index $gfDir/crea.untrans.gfidx $gfDir/crea.2bit >/dev/null + +# test query + +./dynTester ${gfRootDir} query extra/stuff/crea input/crea.mrna output/${testName}.out +diff expected/${testName}.out output/${testName}.out