f7d577042a7e3e41c1121082febb7ff25020bf0b markd Sun Feb 28 13:19:19 2021 -0800 have gfServer check that index files match the required naming convention diff --git src/gfServer/tests/testIndexFile src/gfServer/tests/testIndexFile index 8db0780..beba356 100755 --- src/gfServer/tests/testIndexFile +++ src/gfServer/tests/testIndexFile @@ -1,14 +1,14 @@ #!/bin/bash -e # build index -gfIdx=output/testIndexRna.gfidx +gfIdx=output/creaGeno.untrans.gfidx rm -f $gfIdx mkdir -p output gfServer index $gfIdx input/creaGeno.2bit >/dev/null # read index gfServer start -indexFile=$gfIdx localhost 17768 -canStop input/creaGeno.2bit >/dev/null & sleep 1 gfServer query localhost 17768 input/mCrea.mrna > output/testIndexFile.out gfServer stop localhost 17768 > /dev/null diff -u expected/testIndexFile.out output/testIndexFile.out