e9cd3eef710ba3141d58ef119006b7d2327e5b7f markd Wed Dec 9 13:52:01 2020 -0800 fixed accidently backout of master changes in the last merge diff --git src/hg/hgPhyloPlace/treeToAuspiceJson.c src/hg/hgPhyloPlace/treeToAuspiceJson.c index 7aae5eb..8f6030b 100644 --- src/hg/hgPhyloPlace/treeToAuspiceJson.c +++ src/hg/hgPhyloPlace/treeToAuspiceJson.c @@ -327,33 +327,30 @@ static void rTreeToAuspiceJson(struct phyloTree *node, int depth, struct auspiceJsonInfo *aji, char **retUserOrOld, char **retNClade, char **retGClade, char **retLineage) /* Write Augur/Auspice V2 JSON for tree. Enclosing object start and end are written by caller. */ { if (node->priv) { struct singleNucChange *sncList = node->priv; depth += slCount(sncList); } boolean isUserSample = FALSE; if (node->ident->name) isUserSample = slNameInList(aji->subtreeUserSampleIds, node->ident->name); char *name = node->ident->name; struct sampleMetadata *met = name ? metadataForSample(aji->sampleMetadata, name) : NULL; -if (!isUserSample && met && met->strain) - // Some of Rob's tree names are outdated; use latest from metadata. - name = met->strain; if (name) jsonWriteString(aji->jw, "name", name); else jsonWriteStringf(aji->jw, "name", "NODE%d", aji->nodeNum++); jsonWriteBranchAttrs(aji->jw, node, aji->geneInfoList, aji->gSeqWin); if (node->numEdges > 0) { jsonWriteListStart(aji->jw, "children"); char *kidUserOrOld[node->numEdges]; char *kidNClade[node->numEdges]; char *kidGClade[node->numEdges]; char *kidLineage[node->numEdges]; int i; for (i = 0; i < node->numEdges; i++) {