88485cfa7f13affa28ec5765fe9b2db90cce42b6 markd Tue Dec 8 21:02:15 2020 -0800 hgPcr working diff --git src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html index f9d5a93..95ac977 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html +++ src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html @@ -132,30 +132,31 @@
A dynamic BLAT server is specified with thedynamic
argument to
the blat
or transBlat
specification, followed by
the gfServer
dynamic root-relative path of the directory
containing the 2bit
and gfidx
files, named in the form
myGenome.2bit
- two-bit format genomic sequence
myGenome.untrans.gfidx
- untranslated index, built by gfServer index
myGenome.trans.gfidx
- translated index, built by gfServer -trans index
For example:
transBlat yourLab.yourInstitution.edu 4096 dynamic jillLab blat yourLab.yourInstitution.edu 4096 dynamic jillLab + isPcr yourLab.yourInstitution.edu 4096 dynamic jillLab
for files names in the form:
$rootdir/jillLab/myGenome.2bit $rootdir/jillLab/myGenome.untrans.gfidx $rootdir/jillLab/myGenome.trans.gfidx
For for more deeply nest directory, for instance, for instance following the NCBI convention: