88485cfa7f13affa28ec5765fe9b2db90cce42b6 markd Tue Dec 8 21:02:15 2020 -0800 hgPcr working diff --git src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html index f9d5a93..95ac977 100755 --- src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html +++ src/hg/htdocs/goldenPath/help/hubQuickStartAssembly.html @@ -132,30 +132,31 @@

A dynamic BLAT server is specified with the dynamic argument to the blat or transBlat specification, followed by the gfServer dynamic root-relative path of the directory containing the 2bit and gfidx files, named in the form

For example:

    transBlat yourLab.yourInstitution.edu 4096 dynamic jillLab
    blat yourLab.yourInstitution.edu 4096 dynamic jillLab
+   isPcr yourLab.yourInstitution.edu 4096 dynamic jillLab
 

for files names in the form:

     $rootdir/jillLab/myGenome.2bit
     $rootdir/jillLab/myGenome.untrans.gfidx
     $rootdir/jillLab/myGenome.trans.gfidx
 

For for more deeply nest directory, for instance, for instance following the NCBI convention: