06d7be056190c14b85e71bc12523f18ea6815b5e markd Mon Dec 7 00:50:29 2020 -0800 BLAT mmap index support merge with master diff --git src/hg/inc/hdb.h src/hg/inc/hdb.h index d6eaa09..defca50 100644 --- src/hg/inc/hdb.h +++ src/hg/inc/hdb.h @@ -1041,24 +1041,28 @@ char *hFindLatestSnpTableConn(struct sqlConnection *conn, char *suffix); /* Return the name of the 'snp1__<suffix>' table with the highest build number, if any. * suffix may be NULL to get the 'All SNPs' table (as opposed to Common, Flagged, Mult). */ char *hFindLatestGencodeTableConn(struct sqlConnection *conn, char *suffix); /* Return the 'wgEncodeGencode<suffix>V<version>' table with the highest version number, if any. * If suffix is NULL, it defaults to Basic. */ boolean hDbHasNcbiRefSeq(char *db); /* Return TRUE if db has NCBI's RefSeq alignments and annotations. */ char *hRefSeqAccForChrom(char *db, char *chrom); /* Return the RefSeq NC_000... accession for chrom if we can find it, else just chrom. * db must never change. */ +char *abbreviateRefSeqSummary(char *summary); +/* strip off the uninformative parts from the RefSeq Summary text: the repetitive note + * about the publication subset and the Evidence-Data-Notes */ + boolean isMito(char *chrom); /* Return True if chrom is chrM or chrMT */ char *hdbDefaultKnownDb(char *db); /* Get the default knownGene database from the defaultKnown table. */ char *hdbGetMasterGeneTrack(char *knownDb); /* Get the native gene track for a knownGene database. */ #endif /* HDB_H */