be4311c07e14feb728abc6425ee606ffaa611a58 markd Fri Jan 22 06:46:58 2021 -0800 merge with master diff --git src/hg/lib/gencodeBGP.as src/hg/lib/gencodeBGP.as index 3b2ee1d..6e19516 100644 --- src/hg/lib/gencodeBGP.as +++ src/hg/lib/gencodeBGP.as @@ -1,31 +1,31 @@ table gencodeBGP "GENCODE bigGenePred" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" - string name; "Ensembl Id" + string name; "Ensembl ID" uint score; "Score (0-1000)" char[1] strand; "+ or - for strand" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "RGB value (use R,G,B string in input file)" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" - string name2; "UCSC Genes id" + string name2; "UCSC Genes ID" string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" string type; "Transcript type" string geneName; "Gene Symbol" string geneName2; "UniProt display ID" string geneType; "Gene type" # high level type of transcript (from gencodeAttrs)" string transcriptClass; "Transcript Class" string source; "Source of transcript (from gencodeTranscriptSource)" string transcriptType; "BioType of transcript (from gencodeAttrs)" string tag; "symbolic tags (from gencodeTags)" string level; "support level, tsl1 is strongest support, tsl5 weakest, NA means not analyzed (from gencodeTranscriptionSupportLevel)" # tier: all, basic, canonical