be4311c07e14feb728abc6425ee606ffaa611a58 markd Fri Jan 22 06:46:58 2021 -0800 merge with master diff --git src/hg/makeDb/doc/asmHubs/hgdownload.index.html src/hg/makeDb/doc/asmHubs/hgdownload.index.html new file mode 100755 index 0000000..734cfa6 --- /dev/null +++ src/hg/makeDb/doc/asmHubs/hgdownload.index.html @@ -0,0 +1,75 @@ + + + + + + +

U.C. Santa Cruz Genomics Institute Assembly and Track hubs

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hub gateway	description
primates	NCBI primate genomes (28 assemblies)
mammals	NCBI mammal genomes (115 assemblies)
birds	NCBI bird genomes (72 assemblies)
fishes	NCBI fish genomes (86 assemblies)
vertebrate	NCBI other vertebrate genomes (28 assemblies)
legacy	NCBI genomes legacy/superseded by newer versions (16 assemblies)
plants	NCBI plant genomes (105 assemblies)
VGP	Vertebrate Genomes Project collection (188 assemblies)
globalReference	Global Human Reference genomes, January 2020 (10 assemblies)
mouseStrains	16 mouse strain assembly and track hub, May 2017
gtexAnalysis	Genotype-Tissue Expression (GTEx) Project analysis results track hub, V6 October 2015
gtex	Genotype-Tissue Expression (GTEx) RNA-seq signal track hub, V6 October 2015
neuroDiffCrispr	Structurally conserved primate cerebral cortex lincRNAs track hub, December 2018

+Please note: text file listing of 608 NCBI/VGP genome assembly hubs +

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