be4311c07e14feb728abc6425ee606ffaa611a58
markd
  Fri Jan 22 06:46:58 2021 -0800
merge with master

diff --git src/hg/makeDb/doc/hg38/ncbiRefSeq.txt src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
index b443fcb..d65f817 100644
--- src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
+++ src/hg/makeDb/doc/hg38/ncbiRefSeq.txt
@@ -206,31 +206,32 @@
 
 hgLoadGenePred -genePredExt hg38 ncbiRefSeqOther other.gp
 genePredCheck -db=hg38 ncbiRefSeqOther
 # checked: 5682 failed: 0
 
 ########## early experiment, not used later
 # # and the bigPsl file:
 # mkdir -p /gbdb/hg38/bbi/ncbiRefSeq
 # ln -s `pwd`/${asmName}.hg38.bigPsl.bb /gbdb/hg38/bbi/ncbiRefSeqBigPsl.bb
 # hgBbiDbLink hg38 ncbiRefSeqBigPsl /gbdb/hg38/bbi/ncbiRefSeqBigPsl.bb
 ########## early experiment, not used later
 
 #############################################################################
 # addition of HGMD-restricted subset, Max, Jan 29 2019
 # updated Dec 2019
-cd /hive/data/genomes/hg38/bed/ncbiRefSeq.p13.2019-12-06/
+# updated Dec 2020
+cd /hive/data/genomes/hg38/bed/ncbiRefSeq.p13.2020-10-27/
 # change in 2019: ignore the version numbers, otherwise only 1815 transcripts left, big update by HGMD in 2019?
 # adding "." so NM_123 doesn't match NM_123123                                                                             
 cat /hive/data/outside/hgmd/$year.4-hgmd-public_hg38.tsv | cut -f7 | cut -d. -f1 | sort -u | awk '{print $1"."}' > hgmdTranscripts.txt
 zcat process/hg38.curated.gp.gz | fgrep -f hgmdTranscripts.txt - > hgmd.curated.gp
 hgLoadGenePred -genePredExt hg38 ncbiRefSeqHgmd hgmd.curated.gp
 #############################################################################
 # ncbiRefSeq.p13 update (DONE - 2019-12-06 - Hiram)
 
 # current version information
     cat /gbdb/hg38/ncbiRefSeq/ncbiRefSeqVersion.txt
     # NCBI Homo sapiens Annotation Release 109 (2018-03-29)
 
 # Version information from the file:
 
 # /hive/data/outside/ncbi/genomes/refseq/vertebrate_mammalian/Homo_sapiens/