06d7be056190c14b85e71bc12523f18ea6815b5e markd Mon Dec 7 00:50:29 2020 -0800 BLAT mmap index support merge with master diff --git src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt index 86807cf..2bf061f 100644 --- src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt +++ src/hg/makeDb/doc/vgpAsmHub/vgp.taxId.asmId.class.txt @@ -8,30 +8,31 @@ 89673 GCA_004115245.1_mPhyDis1_v1.h mammals 59479 GCA_004115295.1_mRhiFer1_v1.h mammals 59479 GCA_004115265.2_mRhiFer1_v1.p mammals 63155 GCA_007364235.1_fArcCen1_v1.h fish 1825980 GCA_007399395.1_rGopEvg1_v1.alt reptiles 61383 GCA_007474575.1_mLynCan4_v1.alt mammals 28689 GCA_008658355.1_bAlcTor1_alternate birds 28689 GCA_008658365.1_bAlcTor1_primary birds 9771 GCA_008658375.1_mBalMus1_alternate mammals 42100 GCA_008692045.1_mPhoSin1.alt mammals 59729 GCA_008822115.3_bTaeGut2.mat.v3 birds 59729 GCA_008822125.1_bTaeGut2pat birds 1196302 GCA_009651025.1_bCorMon1.alt birds 9704 GCA_009762295.1_mZalCal1.alt mammals 9704 GCA_009762305.1_mZalCal1.pri mammals +9704 GCF_009762305.2_mZalCal1.pri.v2 mammals 1203425 GCA_009762535.1_fNotCel1.pri fish 1203425 GCA_009762545.1_fNotCel1.alt fish 27794 GCA_009762595.1_rDerCor1.alt reptiles 685728 GCA_009764475.1_sPriPec2.pri sharks 685728 GCA_009764485.1_sPriPec2.alt sharks 121530 GCA_009764505.1_bTauEry1.alt birds 135433 GCA_009764545.1_bGeoTri1.alt birds 27794 GCA_009764565.1_rDerCor1.pri reptiles 135433 GCA_009764595.1_bGeoTri1.pri birds 121530 GCA_009769465.1_bTauEry1.pri birds 8869 GCA_009769485.1_bCygOlo1.alt birds 240206 GCA_009769505.1_bPteGut1.alt birds 8103 GCA_009769515.1_fCycLum1.alt fish 240206 GCA_009769525.1_bPteGut1.pri birds 8103 GCA_009769545.1_fCycLum1.pri fish @@ -54,47 +55,52 @@ 9218 GCA_009819805.1_bPhoRub2.alt birds 54380 GCA_009819825.1_bCarCri1.pri birds 219594 GCA_009819845.1_bAytFul2.alt birds 409849 GCA_009829125.1_fPerMag1.pri fish 409849 GCA_009829135.1_fPerMag1.alt fish 36723 GCA_009829165.1_mMusErm1.alt mammals 296741 GCA_009829205.1_bChiLan1.alt birds 59729 GCA_009859025.1_bTaeGut2.p.v1.alt birds 59729 GCA_009859065.2_bTaeGut2.pri.v2 birds 9771 GCA_009873245.2_mBalMus1.v2 mammals 386614 GCA_010909765.1_sAmbRad1.pri sharks 386614 GCA_010909745.1_sAmbRad1.alt sharks 7757 GCA_010993595.1_kPetMar1.alt otherChordates 8010 GCA_011004835.1_fEsoLuc1.alt fish 8010 GCA_011004845.1_fEsoLuc1.pri fish +8010 GCF_011004845.1_fEsoLuc1.pri fish 100784 GCA_011004865.1_bBalReg1.alt birds 100784 GCA_011004875.1_bBalReg1.pri birds 9483 GCA_011078405.1_mCalJac1.mat primates 9483 GCA_011100535.1_mCalJac1.pat primates 9483 GCA_011100555.1_mCalJac1.pat.X primates 9337 GCA_011100635.1_mTriVul1.pri mammals 9337 GCA_011100645.1_mTriVul1.alt mammals 61156 GCA_011750645.1_mArvNil1.mat mammals 61156 GCA_011762505.1_mArvNil1.pat.X mammals 9739 GCA_011762515.1_mTurTru1.pat mammals 9739 GCA_011762535.1_mTurTru1.mat mammals 61156 GCA_011762545.1_mArvNil1.pat mammals 9739 GCA_011762595.1_mTurTru1.mat.Y mammals 9739 GCF_011762595.1_mTurTru1.mat.Y mammals 13146 GCA_012275265.1_bMelUnd1.mat birds 13146 GCA_012275275.1_bMelUnd1.pat birds 13146 GCA_012275295.1_bMelUnd1.mat.Z birds +13146 GCF_012275295.1_bMelUnd1.mat.Z birds +8005 GCF_013358815.1_fEleEle1.pri fish +9407 GCF_014176215.1_mRouAeg1.p mammals +42514 GCF_015220715.1_fPygNat1.pri fish 56716 GCA_900634415.1_fCotGob3.1 fish 56716 GCA_900634435.1_fCotGob3.1_alternate_haplotype fish 441366 GCA_900634775.1_fGouWil2.1 fish 64144 GCA_900324465.2_fAnaTes1.2 fish 64144 GCA_900650485.1_fAnaTes1.2_alternate_haplotype fish 441366 GCA_900650505.1_fGouWil2.1_alternate_haplotype fish 210632 GCA_900651595.1_fParRan2.1_alternate_haplotype fish 158456 GCA_900651605.1_fBetSpl5.1_alternate_haplotype fish 299321 GCA_900700345.2_fDenClu1.1_alternate_haplotype fish 205130 GCA_900700395.1_fMasArm1.2_alternate_haplotype fish 27687 GCA_900700845.2_fErpCal1.1_alternate_haplotype fish 8175 GCA_900880695.1_fSpaAur1.1_alternate_haplotype fish 173247 GCA_900963505.1_fEcheNa1.1_alternate_haplotype fish 113540 GCA_900964985.2_fSclFor1.1_alternate_haplotype fish 31033 GCA_901000745.3_fTakRub1.2_alternate_haplotype fish @@ -115,54 +121,58 @@ 260995 GCA_902459505.1_aGeoSer1.1 amphibians 260995 GCF_902459505.1_aGeoSer1.1 amphibians 390379 GCA_902500245.1_fThaAma1.1_alternate_haplotype fish 390379 GCA_902500255.1_fThaAma1.1 fish 55149 GCA_902685485.1_mSciVul1.1_alternate_haplotype mammals 55149 GCA_902686455.1_mSciVul1.1 mammals 7906 GCA_902713425.1_fAciRut3.1_maternal_haplotype fish 7906 GCA_902713435.1_fAciRut3.1_paternal_haplotype fish 30522 GCF_003369695.1_UOA_Brahman_1 mammals 9244 GCF_003957555.1_bCalAnn1_v1.p birds 59729 GCF_003957565.1_bTaeGut1_v1.p birds 2489341 GCA_004027225.2_bStrHab1.2.pri birds 2489341 GCF_004027225.2_bStrHab1.2.pri birds 59479 GCF_004115265.1_mRhiFer1_v1.p mammals 89673 GCF_004126475.1_mPhyDis1_v1.p mammals +89673 GCF_004126475.2_mPhyDis1.pri.v3 mammals 63155 GCF_007364275.1_fArcCen1 fish 63155 GCA_007364275.2_fArcCen1 fish 1825980 GCF_007399415.2_rGopEvg1_v1.p reptiles 61383 GCF_007474595.1_mLynCan4_v1.p mammals +61383 GCF_007474595.2_mLynCan4.pri.v2 mammals 42100 GCF_008692025.1_mPhoSin1.pri mammals 59729 GCA_003957565.2_bTaeGut1_v1.p birds 59729 GCF_008822105.2_bTaeGut2.pat.W.v2 birds 1196302 GCF_009650955.1_bCorMon1.pri birds 35005 GCF_009769535.1_rThaEle1.pri reptiles 80427 GCF_009819535.1_rLacAgi1.pri reptiles 219594 GCF_009819795.1_bAytFul2.pri birds 91951 GCF_009819885.1_bCatUst1.pri birds 296741 GCF_009829145.1_bChiLan1.pri birds 36723 GCF_009829155.1_mMusErm1.Pri mammals 386614 GCF_010909765.1_sAmbRad1.pri sharks 7757 GCF_010993605.1_kPetMar1.pri otherChordates +8469 GCF_015237465.1_rCheMyd1.pri reptiles 8154 GCF_900246225.1_fAstCal1.2 fish 64144 GCF_900324465.2_fAnaTes1.2 fish 205130 GCF_900324485.2_fMasArm1.2 fish 223781 GCF_900496995.1_bAquChr1.2 birds 56716 GCF_900634415.1_fCotGob3.1 fish 210632 GCF_900634625.1_fParRan2.1 fish 441366 GCF_900634775.1_fGouWil2.1 fish 158456 GCF_900634795.2_fBetSpl5.2 fish 299321 GCF_900700375.1_fDenClu1.1 fish 27687 GCF_900747795.1_fErpCal1.1 fish 8175 GCF_900880675.1_fSpaAur1.1 fish 173247 GCF_900963305.1_fEcheNa1.1 fish 113540 GCF_900964775.1_fSclFor1.1 fish 31033 GCF_901000725.2_fTakRub1.2 fish 194408 GCF_901001135.1_aRhiBiv1.1 amphibians 8032 GCF_901001165.1_fSalTru1.1 fish 1415580 GCF_901765095.1_aMicUni1.1 amphibians 181472 GCF_902148845.1_fSalaFa1.1 fish 375764 GCF_902148855.1_fSphaOr1.1 fish 586833 GCF_902150065.1_fMyrMur1.1 fish 8049 GCF_902167405.1_gadMor3.0 fish 29144 GCF_902362185.1_fChaCha1.1 fish 7604 GCF_902459465.1_eAstRub1.3 echinoderm +38674 GCF_903995425.1_mOncTor1.1 mammals