06d7be056190c14b85e71bc12523f18ea6815b5e markd Mon Dec 7 00:50:29 2020 -0800 BLAT mmap index support merge with master diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index 2c30cf0..5096aa3 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -54,31 +54,31 @@ grcRefAssembly = GRCh38 ver = 35 prevVer = 34 gencodeOrg = Gencode_human ftpReleaseSubdir = release_${ver} annGffTypeName = chr_patch_hapl_scaff.annotation ensemblVer = 101_38 ensemblPrevVer = 100_38 ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer} else ifeq (${db},hg19) grcRefAssembly = GRCh37 verBase = 35 ver = ${verBase}lift37 backmapTargetVer = 19 ftpReleaseSubdir = release_${verBase}/GRCh37_mapping - prevVer = 35lift37 + prevVer = 34lift37 gencodeOrg = Gencode_human annGffTypeName = annotation ensemblVer = 74_37 # only used to get genome chromsome name mappings, don't change ensemblPrevVer = ${ensemblVer} # doesn't change ensemblCDnaDb = homo_sapiens_cdna_${ensemblPrevVer} isBackmap = yes else $(error unimplement genome database: ${db}) endif # END EDIT THESE EACH RELEASE ifeq (${preRelease},yes) # pre-release baseUrl = ftp://ftp.ebi.ac.uk/pub/databases/havana/gencode_pre