06d7be056190c14b85e71bc12523f18ea6815b5e markd Mon Dec 7 00:50:29 2020 -0800 BLAT mmap index support merge with master diff --git src/hg/makeDb/trackDb/human/mastermind.html src/hg/makeDb/trackDb/human/mastermind.html index 3a8023e..12d1a23 100644 --- src/hg/makeDb/trackDb/human/mastermind.html +++ src/hg/makeDb/trackDb/human/mastermind.html @@ -84,30 +84,34 @@ <p> For automated download and analysis, the genome annotation is stored in a bigBed file that can be downloaded from <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/bbi/" target="_blank">our download server</a>. The file for this track is called <tt>mastermind.bb</tt>. Individual regions or the whole genome annotation can be obtained using our tool <tt>bigBedToBed</tt> which can be compiled from the source code or downloaded as a precompiled binary for your system. Instructions for downloading source code and binaries can be found <a href="http://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads">here</a>. The tool can also be used to obtain only features within a given range, e.g. <tt>bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/mastermind.bb -chrom=chr21 -start=0 -end=100000000 stdout</tt></p> </p> +<p> +Previous versions of this track can be found on our <a href="http://hgdownload.soe.ucsc.edu/goldenPath/archive/$db/mastermind">archive download server</a>. +</p> + <h2>Methods</h2> <p>The Mastermind Cited Variants file was <a target=_blank href="https://www.genomenon.com/cvr/">downloaded</a>, converted to BED format with scripts that are available in our <a target=_blank href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/hg/utils/otto/mastermind">Git repository</a> and converted to a bigBed file with the UCSC genome browser tool bedToBigBed.</p> <p>This track is automatically updated two weeks after every Mastermind CVR release, which happens every three months.</p> <h2>Credits</h2> <p> Thanks to Mark Kiel, Steve Schwartz and Clayton Wheeler from Genomenon for making these data available.