06d7be056190c14b85e71bc12523f18ea6815b5e
markd
  Mon Dec 7 00:50:29 2020 -0800
BLAT mmap index support merge with master

diff --git src/hg/makeDb/trackDb/human/trackDb.gtex.ra src/hg/makeDb/trackDb/human/trackDb.gtex.ra
index b509078..dfcba5f 100644
--- src/hg/makeDb/trackDb/human/trackDb.gtex.ra
+++ src/hg/makeDb/trackDb/human/trackDb.gtex.ra
@@ -1,33 +1,33 @@
 # GTEx (Genotype Tissue Expression) project tracks 
 
 # Allele-specific expression
 
 include trackDb.gtexAwgAse.ra
 
 # Gene expression
 
 track gtexGene
 shortLabel GTEx Gene
 longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)
 type bed 6 +
 html gtexGeneExpr
 group expression
-priority 1
+priority 10.1
 maxItems 200
 spectrum on
-visibility pack
+visibility hide
 
 searchTable gtexGene
 query select chrom, chromStart, chromEnd, geneId from %s where geneId like '%s%%'
 termRegex gtex:ENSG[0-9]+(\.[0-9]+)?
 termPrefix gtex:
 shortCircuit 1
 
 track gtexTranscExpr
 shortLabel GTEx Transcript
 longLabel Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors
 type bigBarChart
 barChartLabel Tissue types
 barChartUnit TPM
 # Get the barChartLabels from the last line in the bed file.  
 barChartBars \
@@ -68,31 +68,32 @@
 release alpha
 type bed 6 +
 shortLabel GTEx Expr V4
 longLabel Gene Expression in 53 tissues from GTEx RNA-seq of 2921 samples, 209 donors (V4, Aug 2014)
 html gtexGeneExprV4
 group expression
 priority 10.1
 
 track gtexGeneV8
 shortLabel GTEx Gene V8
 longLabel Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)
 type bed 6 +
 group expression
 maxItems 200
 spectrum on
-priority 10.1
+priority 1
+visibility pack
 
 track gtexSnp
 release alpha
 type bed 4
 shortLabel GTEx Variant
 longLabel Genetic variants imputed from genotyping of GTEx samples (209 donors)
 group expression
 html getxEqtlSnp
 priority 10.15
 
 track gtexEqtlSnp
 release alpha
 type bed 4
 shortLabel GTEx Pilot eQTL
 longLabel Genetic variants identified by GTEx V4 (pilot) analysis as significantly affecting gene expression