06d7be056190c14b85e71bc12523f18ea6815b5e markd Mon Dec 7 00:50:29 2020 -0800 BLAT mmap index support merge with master diff --git src/hg/makeDb/trackDb/refSeqComposite.html src/hg/makeDb/trackDb/refSeqComposite.html index bf68fc8..d305f31 100644 --- src/hg/makeDb/trackDb/refSeqComposite.html +++ src/hg/makeDb/trackDb/refSeqComposite.html @@ -245,30 +245,34 @@ <tt>genePredToGtf $db ncbiRefSeqPredicted ncbiRefSeqPredicted.gtf</tt> <p> Note that using genePredToGtf in this manner accesses our public MySQL server, and you therefore must set up your hg.conf as described on the MySQL page linked near the beginning of the Data Access section.</p> <p> A file containing the RNA sequences in <a href="http://genetics.bwh.harvard.edu/pph/FASTA.html" target="_blank">FASTA</a> format for all items in the <em>RefSeq All</em>, <em>RefSeq Curated</em>, and <em>RefSeq Predicted</em> tracks can be found on our downloads server <a href="http://hgdownload.soe.ucsc.edu/gbdb/$db/ncbiRefSeq/seqNcbiRefSeq.rna.fa" target="_blank">here</a>.</p> <p> Please refer to our <a href="https://groups.google.com/a/soe.ucsc.edu/forum/#!forum/genome" target="_blank">mailing list archives</a> for questions.</p> +<p> +Previous versions of the ncbiRefSeq set of tracks can be found on our <a href="http://hgdownload.soe.ucsc.edu/goldenPath/archive/$db/ncbiRefSeq">archive download server</a>. +</p> + <h2>Credits</h2> <p> This track was produced at UCSC from data generated by scientists worldwide and curated by the NCBI RefSeq project. </p> <h2>References</h2> <p> Kent WJ. <a href="https://genome.cshlp.org/content/12/4/656.full" target="_blank">BLAT - the BLAST-like alignment tool</a>. <em>Genome Res.</em> 2002 Apr;12(4):656-64. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11932250" target="_blank">11932250</a>; PMC: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC187518/" target="_blank">PMC187518</a></p> <p> Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J, Landrum MJ, McGarvey KM <em>et al</em>.