be4311c07e14feb728abc6425ee606ffaa611a58 markd Fri Jan 22 06:46:58 2021 -0800 merge with master diff --git src/hg/utils/otto/nextstrainNcov/nextstrainClade.as src/hg/utils/otto/nextstrainNcov/nextstrainClade.as index afa9d88..94e6e23 100644 --- src/hg/utils/otto/nextstrainNcov/nextstrainClade.as +++ src/hg/utils/otto/nextstrainNcov/nextstrainClade.as @@ -1,24 +1,24 @@ table nextstrainClade "Clades assigned by nextstrain.org" ( string chrom; "Reference sequence accession" uint chromStart; "Start position in reference" uint chromEnd; "End position in reference" string name; "Name of clade" uint score; "Placeholder for BED compatibility (0)" char[1] strand; "Placeholder for BED compatibility (+)" uint thickStart; "Start of where display should be thick" uint thickEnd; "End of where display should be thick" uint reserved; "itemRgb color" int blockCount; "Number of blocks (characteristic variants)" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" - string variants; "Mutations that occurred on the path from the reference to this clade" + lstring variants; "Mutations that occurred on the path from the reference to this clade" string dateInferred; "Date of clade branch inferred by TreeTime" string dateConfMin; "Earliest date in TreeTime confidence interval" string dateConfMax; "Latest date in TreeTime confidence interval" string countryInferred; "Country inferred by TreeTime" string countryConf; "Top-scoring countries and confidence from TreeTime" int sampleCount; "Number of samples belonging to the clade" string[sampleCount] samples; "Samples belonging to the clade" )