ecacb0a15e8ddbe9b2e62381e30621ba70f82d8f
markd
  Sun Jun 28 14:36:10 2020 -0700
dynamic server tests working

diff --git src/jkOwnLib/genoFind.c src/jkOwnLib/genoFind.c
index b359c0c..50612e8 100644
--- src/jkOwnLib/genoFind.c
+++ src/jkOwnLib/genoFind.c
@@ -133,31 +133,31 @@
 if (gf != NULL)
     {
     freeMem(gf->lists);
     freeMem(gf->listSizes);
     freeMem(gf->allocated);
     if ((sources = gf->sources) != NULL)
 	{
 	for (i=0; i<gf->sourceCount; ++i)
 	    bitFree(&sources[i].maskedBits);
 	freeMem(sources);
 	}
     freez(pGenoFind);
     }
 }
 
-static struct genoFind *loadGenoFind(FILE *f, void *memMapped)
+static struct genoFind *genoFindLoad(FILE *f, void *memMapped)
 /* construct one genoFind from mapped file */
 {
 struct genoFind *gf;
 AllocVar(gf);
 
 // read the parameters
 mustRead(f, &gf->maxPat, sizeof(gf->maxPat));
 mustRead(f, &gf->minMatch, sizeof(gf->minMatch));
 mustRead(f, &gf->maxGap, sizeof(gf->maxGap));
 mustRead(f, &gf->tileSize, sizeof(gf->tileSize));
 mustRead(f, &gf->stepSize, sizeof(gf->stepSize));
 mustRead(f, &gf->tileSpaceSize, sizeof(gf->tileSpaceSize));
 mustRead(f, &gf->tileMask, sizeof(gf->tileMask));
 mustRead(f, &gf->sourceCount, sizeof(gf->sourceCount));
 mustRead(f, &gf->isPep, sizeof(gf->isPep));
@@ -297,35 +297,35 @@
 mustRead(f, &gfIdx->isTrans, sizeof(gfIdx->isTrans));
 if (isTrans != gfIdx->isTrans)
     errAbort("index file isTrans==%d and -trans==%d", gfIdx->isTrans, isTrans);
 gfIdx->memLength = fileSize(fileName);
 gfIdx->memMapped = mmap(NULL, gfIdx->memLength, PROT_READ, MAP_SHARED, fileno(f), 0);
 if (gfIdx->memMapped == MAP_FAILED)
     errnoAbort("mmap of index file failed: %s", fileName);
 if (madvise(gfIdx->memMapped, gfIdx->memLength, MADV_RANDOM | MADV_WILLNEED) < 0)
     errnoAbort("madvise of index file failed: %s", fileName);
 
 if (isTrans)
     {
     int i, j;
     for (i = 0; i < 2; i++)
         for (j = 0; j < 3; j++)
-            gfIdx->transGf[i][j] = loadGenoFind(f, gfIdx->memMapped);
+            gfIdx->transGf[i][j] = genoFindLoad(f, gfIdx->memMapped);
     }
 else
     {
-    gfIdx->untransGf = loadGenoFind(f, gfIdx->memMapped);
+    gfIdx->untransGf = genoFindLoad(f, gfIdx->memMapped);
     }
 carefulClose(&f);
 return gfIdx;
 }
 
 int gfPowerOf20(int n)
 /* Return a 20 to the n */
 {
 int res = 20;
 while (--n > 0)
     res *= 20;
 return res;
 }
 
 void gfCheckTileSize(int tileSize, boolean isPep)