c3c65fde6dd5aa6f20860c7113eb9ee22cf35b96 markd Wed Jan 15 08:37:28 2020 -0800 Initial pass at 64bit blat index diff --git src/jkOwnLib/patSpace.c src/jkOwnLib/patSpace.c index 80f1de7..88b29d5 100644 --- src/jkOwnLib/patSpace.c +++ src/jkOwnLib/patSpace.c @@ -3,31 +3,31 @@ /* Copyright 1999-2003 Jim Kent. All rights reserved. */ #include "common.h" #include "portable.h" #include "dnaseq.h" #include "ooc.h" #include "patSpace.h" #define blockSize (256) #define BIGONE /* define this for 32 bit version. */ #ifdef BIGONE #define maxBlockCount (2*230*1024 - 1) -#define psBits bits32 +#define psBits bits64 /* psBits is the size of an index word. If 16 bits * patSpace will use less memory, but be limited to * 16 meg or less genome size. */ #else /* BIGONE */ #define maxBlockCount (64*1024 - 1) #define psBits bits16 /* psBits is the size of an index word. If 16 bits * patSpace will use less memory, but be limited to * 16 meg or less genome size. */ #endif /* BIGONE */