be4311c07e14feb728abc6425ee606ffaa611a58
markd
  Fri Jan 22 06:46:58 2021 -0800
merge with master

diff --git src/lib/psl.as src/lib/psl.as
deleted file mode 100644
index 7114683..0000000
--- src/lib/psl.as
+++ /dev/null
@@ -1,25 +0,0 @@
-table psl
-"Summary info about a patSpace alignment"
-    (
-    uint matches;  "Number of bases that match that aren't repeats"
-    uint misMatches; "Number of bases that don't match"
-    uint repMatches; "Number of bases that match but are part of repeats"
-    uint nCount;  "Number of 'N' bases"
-    uint qNumInsert; "Number of inserts in query"
-    int qBaseInsert; "Number of bases inserted in query"
-    uint tNumInsert; "Number of inserts in target"
-    int tBaseInsert; "Number of bases inserted in target"
-    char[2] strand; "+ or - for strand. First character query, second target (optional)"
-    string qName; "Query sequence name"
-    uint qSize; "Query sequence size"
-    uint qStart; "Alignment start position in query"
-    uint qEnd; "Alignment end position in query"
-    string tName; "Target sequence name"
-    uint tSize; "Target sequence size"
-    uint tStart; "Alignment start position in target"
-    uint tEnd; "Alignment end position in target"
-    uint blockCount; "Number of blocks in alignment"
-    uint[blockCount] blockSizes; "Size of each block"
-    uint[blockCount] qStarts; "Start of each block in query."
-    uint[blockCount] tStarts; "Start of each block in target."
-    )