be4311c07e14feb728abc6425ee606ffaa611a58 markd Fri Jan 22 06:46:58 2021 -0800 merge with master diff --git src/utils/bedToBigBed/tests/makefile src/utils/bedToBigBed/tests/makefile index 1e11192..6d422dc 100644 --- src/utils/bedToBigBed/tests/makefile +++ src/utils/bedToBigBed/tests/makefile @@ -1,25 +1,51 @@ kentSrc = ../../.. A = bedToBigBed include ../../../inc/common.mk -test: testRgb testNotSorted testMultiInsAtEnd +test: testRgb testNotSorted testMultiInsAtEnd itemsRgb testRgb: outputDir ${BINDIR}/${A} -type=bed9 -as=input/itemRgb.as input/itemRgb.bed input/chrom.sizes output/itemRgb.bb 2> /dev/null bigBedToBed output/itemRgb.bb output/test_itemRgb.bed diff input/itemRgb.bed output/test_itemRgb.bed testNotSorted: outputDir -${BINDIR}/${A} -type=bed12 input/notSorted.bed input/notSorted.chrom.sizes /dev/null 2> output/notSorted.err || true diff expected/notSorted.err output/notSorted.err testMultiInsAtEnd: outputDir ${BINDIR}/${A} input/multiInsAtEnd.bed input/chrom.sizes output/multiInsAtEnd.bb 2> /dev/null bigBedToBed output/multiInsAtEnd.bb output/test_multiInsAtEnd.bed diff -w input/multiInsAtEnd.bed output/test_multiInsAtEnd.bed +itemsRgb: outputDir + ${BINDIR}/${A} input/reservedBed12.bed input/chrom.sizes output/reservedBed12.bb 2> /dev/null + bigBedToBed output/reservedBed12.bb output/test_reservedBed12.bed + diff input/reservedBed12.bed output/test_reservedBed12.bed + ${BINDIR}/${A} -type=bed12 input/reservedBed12.bed input/chrom.sizes output/reservedBed12.bb 2> /dev/null + bigBedToBed output/reservedBed12.bb output/test_reservedBed12.bed + diff input/reservedBed12.bed output/test_reservedBed12.bed + ${BINDIR}/${A} -type=bed9+ -as=input/reservedBed12.as input/reservedBed12.bed input/chrom.sizes output/reservedBed12.bb 2> /dev/null + bigBedToBed output/reservedBed12.bb output/test_reservedBed12.bed + diff input/reservedBed12.bed output/test_reservedBed12.bed + ${BINDIR}/${A} -type=bed9+ -as=input/itemRgbBed12.as input/reservedBed12.bed input/chrom.sizes output/reservedBed12.bb 2> /dev/null + bigBedToBed output/reservedBed12.bb output/test_reservedBed12.bed + diff input/reservedBed12.bed output/test_reservedBed12.bed + ${BINDIR}/${A} input/itemRgbBed12.bed input/chrom.sizes output/itemRgbBed12.bb 2> /dev/null + bigBedToBed output/itemRgbBed12.bb output/test_itemRgbBed12.bed + diff input/itemRgbBed12.bed output/test_itemRgbBed12.bed + ${BINDIR}/${A} -type=bed12 input/itemRgbBed12.bed input/chrom.sizes output/itemRgbBed12.bb 2> /dev/null + bigBedToBed output/itemRgbBed12.bb output/test_itemRgbBed12.bed + diff input/itemRgbBed12.bed output/test_itemRgbBed12.bed + ${BINDIR}/${A} -type=bed12 -as=input/reservedBed12.as input/itemRgbBed12.bed input/chrom.sizes output/itemRgbBed12.bb 2> /dev/null + bigBedToBed output/itemRgbBed12.bb output/test_itemRgbBed12.bed + diff input/itemRgbBed12.bed output/test_itemRgbBed12.bed + ${BINDIR}/${A} -type=bed12 -as=input/itemRgbBed12.as input/itemRgbBed12.bed input/chrom.sizes output/itemRgbBed12.bb 2> /dev/null + bigBedToBed output/itemRgbBed12.bb output/test_itemRgbBed12.bed + diff input/itemRgbBed12.bed output/test_itemRgbBed12.bed + clean:: @rm -rf output outputDir: @${MKDIR} -p output