be4311c07e14feb728abc6425ee606ffaa611a58
markd
  Fri Jan 22 06:46:58 2021 -0800
merge with master

diff --git src/utils/clusterMatrixToBarChartBed/tests/hub.conf src/utils/clusterMatrixToBarChartBed/tests/hub.conf
new file mode 100644
index 0000000..54a7a39
--- /dev/null
+++ src/utils/clusterMatrixToBarChartBed/tests/hub.conf
@@ -0,0 +1,23 @@
+# default config file for the cbHub UCSC track hub generator
+
+# required values
+meta = "test.meta"
+ucscDb = "hg38" # UCSC genome ID for the track hub. Important for chrom.sizes download
+geneIdType = "raw" # the gene ID in the expression matrix, e.g. "auto", "symbols", "gencode-human" or "gencode-mouse"
+geneModel = "test.coords" # gene model file to use to place the genes onto the genome
+email = "user@university.edu" # track hubs should have a contact email address
+hubUrl = "https://www.sgi.com"
+
+# these options do not need to be specified here, they default to the values specified in cellbrowser.conf
+# or the values specified on the command line. 
+
+shortLabel = "Sample Hub" # name of hub
+exprMatrix = "test.matrix"
+meta = "test.meta"
+clusterField = "col1"
+unit = "UMI counts"
+
+#clusterOrder = "clusterOrder.txt"  # file with cluster names to order the tracks (default is alphabetical)
+#bamDir = "bam" # directory with .bam files, optional. If not present, don't do bam merging
+#refHtmlFile = "reference.html" # a file with the reference html to the paper. Will be added to the desc html pages
+