36f8f6fb024b20cc523cdf9ebde7491eca84fd7c markd Sun Dec 6 20:33:20 2020 -0800 multiple request per connect works except hgBlat diff --git src/webBlat/install.txt src/webBlat/install.txt index fa9e401..d9300c5 100644 --- src/webBlat/install.txt +++ src/webBlat/install.txt @@ -107,35 +107,35 @@ The background and company commands are optional. The webBlat.cfg file must have at least one valid gfServer or gfServerTrans line, and a tempDir line. Here is a webBlat.cfg file that you might find at a typical installation: company Awesome Research Amalgamated background /images/dnaPaper.jpg gfServerTrans bigRamMachine 17778 /data/genomes/twoBit Human Genome gfServer bigRamMachine 17779 /data/genomes/twoBit Human Genome gfServerTrans bigRamMachine 17780 /data/genomes/twoBit Mouse Genome gfServer bigRamMachine 17781 /data/genomestwoBit Mouse Genome tempDir ../tmp For dynamic gfServer, which server both untranslated and translated request, -must be given a genome name, multiple genomes can be on same port. -The specification is in the form: +must be given a genome name and server root relative directory. +Multiple genomes can be on same port. The specification is in the form: -dynServer mediumRamMachine 17799 hg19 /data/genomes/hg19 Human Genome -dynServer mediumRamMachine 17799 mm10 /data/genomes/mm10 Mouse Genome +dynServer mediumRamMachine 17799 hg19 genomes/hg19 /data/genomes/hg19 Human Genome +dynServer mediumRamMachine 17799 mm10 genomes/mm10 /data/genomes/mm10 Mouse Genome PUTTING WEBBLAT WHERE THE WEB SERVER CAN EXECUTE IT The details of this step vary highly from web server to web server. On a typical Apache installation it might be: ssh webServer cd kent/webBlat cp webBlat /usr/local/apache/cgi-bin cp webBlat.cfg /usr/local/apache/cgi-bin assuming that you've put the executable and config file in kent/webBlat. On OS-X, instead of /usr/local/apache/cgi-bin typically you'll copy stuff to /LibraryWebServer/CGI-Executables. Unless you are administering your own computer you will likely need to ask your local system administrators for help with this step.