e9492dbfa8a68aee133893d4b02475b0aec27bb9
markd
  Sun Dec 6 23:48:42 2020 -0800
webblat and hgBlat working

diff --git src/webBlat/install.txt src/webBlat/install.txt
index d9300c5..69b13fb 100644
--- src/webBlat/install.txt
+++ src/webBlat/install.txt
@@ -85,31 +85,35 @@
   gfServer index -trans $rootdir/$genome/$genome.trans.gfidx $rootdir/$genome/$genome.2bit
 
 
 EDITING THE WEBBLAT.CFG FILE
 
 The webBlat.cfg file tells the webBlat program where to look for gfServers and
 for sequence.  The basic format of the .cfg file is line oriented with the
 first word of the line being a command.  Blank lines and lines starting with #
 are ignored.  The webBlat.cfg and webPcr.cfg files are similar. The webBlat.cfg
 commands are:
    gfServer  -  defines host and port a (untranslated) gfServer is running on, the 
    		associated sequence directory, and the name of the database to display in
                 the webPcr web page.
    gfServerTrans - defines location of a translated server.
    dynServer - define the location of a dynamic gfServer that runs under xinetd with
-               pre-build indexes.
+               pre-build indexes.  Arguments are:
+               - host, port
+               - genome - symbolic name of genome
+               - genomeDataDir - absolute or gfServer root-relative directory containing index files
+               - sequenceDir
    background - defines the background image if any to display on web page
    company    - defines company name to display on web page
    tempDir    - where to put temporary files.  This path is relative to where the web
                 server executes CGI scripts.  It is good to remove files that haven't
 		been accessed for 24 hours from this directory periodically, 
 		via a cron job or similar mechanism.
 The background and company commands are optional.  The webBlat.cfg file must
 have at least one valid gfServer or gfServerTrans line, and a tempDir line.
 Here is a webBlat.cfg file that you
 might find at a typical installation:
 
 company Awesome Research Amalgamated
 background /images/dnaPaper.jpg
 gfServerTrans bigRamMachine 17778 /data/genomes/twoBit Human Genome
 gfServer bigRamMachine 17779 /data/genomes/twoBit Human Genome