d8a949135724f97cfc92b52111ac223fece3dbf5
markd
  Mon Jun 29 14:53:25 2020 -0700
got entire tree compliing with geneFind changes

diff --git src/webBlat/webBlat.c src/webBlat/webBlat.c
index a7abfdc..8ae9d05 100644
--- src/webBlat/webBlat.c
+++ src/webBlat/webBlat.c
@@ -357,52 +357,52 @@
 gvo = gfOutputPsl(0, protQuery, FALSE, f, FALSE, TRUE);
 gvo->includeTargetFile = TRUE;
 
 txServer = isTxType(type);
 server = findServer(txServer);
 
 /* Loop through sequences doing alignments and saving to file. */
 for (seq = seqList; seq != NULL; seq = seq->next)
     {
     conn = gfConnect(server->host, server->port);
     if (txServer)
         {
 	gvo->reportTargetStrand = TRUE;
 	if (protQuery)
 	    {
-	    gfAlignTrans(&conn, server->seqDir, seq, 5, tFileCache, gvo);
+	    gfAlignTrans(&conn, server->seqDir, seq, 5, tFileCache, gvo, NULL);
 	    }
 	else
 	    {
 	    boolean isRna = sameWord(type, "RNA");
 	    gfAlignTransTrans(&conn, server->seqDir, seq, FALSE, 5,
-			    tFileCache, gvo, isRna);
+			    tFileCache, gvo, isRna, NULL);
 	    if (!isRna)
 	        {
 		reverseComplement(seq->dna, seq->size);
 		conn = gfConnect(server->host, server->port);
 		gfAlignTransTrans(&conn, server->seqDir, seq, TRUE, 5,
-		                        tFileCache, gvo, FALSE);
+		                        tFileCache, gvo, FALSE, NULL);
 		}
 	    }
 	}
     else
         {
-	gfAlignStrand(&conn, server->seqDir, seq, FALSE, 16, tFileCache, gvo);
+	gfAlignStrand(&conn, server->seqDir, seq, FALSE, 16, tFileCache, gvo, NULL);
 	reverseComplement(seq->dna, seq->size);
 	conn = gfConnect(server->host, server->port);
-	gfAlignStrand(&conn, server->seqDir, seq, TRUE, 16, tFileCache, gvo);
+	gfAlignStrand(&conn, server->seqDir, seq, TRUE, 16, tFileCache, gvo, NULL);
 	}
     gfOutputQuery(gvo, f);
     }
 carefulClose(&f);
 
 /* Display alignment results. */
 aliLines(pslName, faName, server->name, type);
 }
 
 void doGetSeq()
 /* Put up form that asks them to submit sequence. */
 {
 char *qType = NULL;
 char **queryMenu = NULL;
 int queryMenuSize = 0;