a74c645505a135d5c1e923afe477cdeb9c15bded markd Wed Jul 8 22:27:42 2020 -0700 added including multiple container directoies in genome dir path to gfServer diff --git src/gfServer/tests/testDynServerTrans src/gfServer/tests/testDynServerTrans index a97e826..ea6eb8d 100755 --- src/gfServer/tests/testDynServerTrans +++ src/gfServer/tests/testDynServerTrans @@ -1,13 +1,16 @@ #!/bin/bash -e +testName=$(basename $0) + # build index -gfDir=output/rootDynServerTrans/crea +gfRootDir=output/${testName}_root +gfDir=${gfRootDir}/crea rm -rf $gfDir mkdir -p $gfDir cp -f input/creaGeno.2bit $gfDir/crea.2bit gfServer index -trans $gfDir/crea.trans.gfidx $gfDir/crea.2bit >/dev/null # test query -./dynTester $(dirname $gfDir) transQuery crea input/crea.mrna output/testDynServerTrans.out -diff expected/testDynServerTrans.out output/testDynServerTrans.out +./dynTester $gfRootDir transQuery crea input/crea.mrna output/${testName}.out +diff expected/${testName}.out output/${testName}.out