06d7be056190c14b85e71bc12523f18ea6815b5e markd Mon Dec 7 00:50:29 2020 -0800 BLAT mmap index support merge with master diff --git src/hg/hgGateway/hgGateway.html src/hg/hgGateway/hgGateway.html index ed73c1b..94b10b4 100644 --- src/hg/hgGateway/hgGateway.html +++ src/hg/hgGateway/hgGateway.html @@ -1,258 +1,259 @@ <!-- For determining width of scrollbar (if there is one) --> <div id="sbTestContainer"> <div id="sbTestContainerDPlain"></div> <div id="sbTestContainerDScroll" style="overflow: scroll;"> <div id="sbTestContainerDInsideScroll"></div> </div> </div> <div id="pageContent"> <div id="selectSpeciesSection" class="jwColumn" style="width: 450px;"> <div class="jwSectionTitle"> Browse/Select Species </div> <div class="jwSectionContents"> <div id="popSpeciesTitle" class="jwSubsectionTitle"> Popular Species </div> <div class="jwSubsectionContents"> <div class="jwIconWrapper"> <div class="jwIconSprite jwIconSpriteHuman"></div> <div class="jwIconSpriteLabel">Human</div> </div> <div class="jwIconWrapper"> <div class="jwIconSprite jwIconSpriteMouse"></div> <div class="jwIconSpriteLabel">Mouse</div> </div> <div class="jwIconWrapper"> <div class="jwIconSprite jwIconSpriteRat"></div> <div class="jwIconSpriteLabel">Rat</div> </div> <div class="jwIconWrapper"> <div class="jwIconSprite jwIconSpriteZebrafish"></div> <div class="jwIconSpriteLabel">Zebrafish</div> </div> <div class="jwIconWrapper"> <div class="jwIconSprite jwIconSpriteFly"></div> <div class="jwIconSpriteLabel">Fruitfly</div> </div> <div class="jwIconWrapper"> <div class="jwIconSprite jwIconSpriteWorm"></div> <div class="jwIconSpriteLabel">Worm</div> </div> <div class="jwIconWrapper"> <div class="jwIconSprite jwIconSpriteYeast"></div> <div class="jwIconSpriteLabel">Yeast</div> </div> <div> - <input id="speciesSearch" value="" size=40> + <input id="speciesSearch" value="" size=48> </div> + <br><a target="_blank" href="/FAQ/FAQreleases.html#release13">Can't find a genome assembly?</a> </div> <!-- This subsection is hidden unless hgGateway.js has a tree to draw. --> <div id="representedSpeciesTitle" class="jwSubsectionTitle" style="display: none;"> Represented Species </div> <div id="speciesGraphic" class="jwSubsectionContents" style="display: none;"> <div id="sliderWidgetContainer" class="jwSliderWidget"> <div id="sliderSvgContainer" class="jwSliderIcon"> <svg id="sliderSvg" xmlns:svg="http://www.w3.org/2000/svg" xmlns="http://www.w3.org/2000/svg" version="1.1" height="53" width="30"> <rect id="sliderRectangle" ry="3" y="1.5" x="1.5" height="50" width="24" style="fill: none; stroke: #222222; stroke-width: 3;"></rect> <path id="sliderTriangle" d="m 2.5,24 0,6 4,-3 z" style="fill: #222222; stroke: #222222; stroke-width: 3"></path> </svg> </div> <!-- sliderSvgContainer --> <div class="jwRainbowSlider" id="rainbowSlider"> <!-- JS will populate this --> </div> </div> <div class="jwSpeciesPicker" id="speciesPicker"> <div id="speciesTreeContainer" class="jwColumn" style="overflow: visible;"> <svg id="speciesTree" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink"> <defs> <!-- The y coordinates of these will be overwritten by JS. --> <!-- I tried creating them in JS, but then the image style url('#clipWhatever') didn't work. --> <clipPath id="clipHuman"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipMouse"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipFly"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipWorm"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipYeast"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipMonkey"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipHedgehog"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipPig"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipCow"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipOrca"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipHorse"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipDog"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipWalrus"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipBat"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipElephant"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipManatee"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipArmadillo"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipKangaroo"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipBird"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipLizard"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipFrog"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipFish"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> <clipPath id="clipEbola"> <rect x="2" y="0" width="65" height="65"></rect> </clipPath> </defs> <style> text { stroke:none; fill: black; font-size: 12px; text-anchor: end; letter-spacing: 0.025em; cursor: pointer; } text:hover, text.selected { fill: #31469A; /* rainbow dark blue: */ font-weight: bold; } text.trackHubsLink { text-anchor: start; } line { stroke: #4b759d; stroke-width: 1; } line:hover { stroke-width: 2; } </style> <!-- Tree inserted here by JS --> </svg> </div> <!-- speciesTreeContainer --> </div> <!-- speciesPicker --> </div> <!-- subsection contents --> </div> </div> <div id="findPositionSection" class ="jwColumn"> <div id="findPositionTitle" class="jwSectionTitle"> Find Position </div> <div id="findPositionContents" class="jwSectionContents" style="display: none;"> <!-- To avoid empty containers jumping around, hide first. --> <div id="findPosInputContainer" style="display: inline-block;"> <div id="selectAssemblyLabel" class="jwInputLabel">Assembly</div> <select id="selectAssembly"> </select> <div class="vertSpacerAbovePosition"></div> <div class="jwInputLabel"> Position/Search Term </div> <input id="positionInput" value="" size="40"> <div class="jwCurrentPos"> Current position: <span id="positionDisplay" class="jwPosDisplay"></span> <i id="copyPosition" class="fa fa-copy jwTextBlue" title="Copy the current position into the input above"></i> </div> </div> <div class="jwGoButtonContainer" title="Go to the Genome Browser"> <div class="jwGoButton"> GO </div> <i class="jwGoIcon fa fa-play fa-2x"></i> </div> <div id="surveyContainer" class="jwSurveyContainer"></div> <div class="vertSpacerBelowPosition jwClearBoth"></div> <div id="descriptionTitle" class="jwDescriptionTitle"> <div class="jwFloatLeft"> <b><span id="descriptionGenome"></span> Genome Browser</b> - <span id="descriptionDb"></span> assembly </div> <div class="jwFloatRight" style="margin-left: 5px;"> <a id="chromInfoLink" class="jwAnchor" href="hgTracks?chromInfoPage=&hgsid=$hgsid"> <div class="jwWhiteButton"> view sequences </div> </a> </div> <div class="jwClearBoth"></div> </div> <div id="descriptionText" class="jwDescriptionText"> </div> </div> </div> </div> <div style="clear: both;"></div>