06d7be056190c14b85e71bc12523f18ea6815b5e
markd
  Mon Dec 7 00:50:29 2020 -0800
BLAT mmap index support merge with master

diff --git src/hg/hgPhyloPlace/makefile src/hg/hgPhyloPlace/makefile
new file mode 100644
index 0000000..4e96a96
--- /dev/null
+++ src/hg/hgPhyloPlace/makefile
@@ -0,0 +1,29 @@
+kentSrc = ../..
+include ../../inc/common.mk
+
+L += $(MYSQLLIBS) -lm
+MYLIBDIR = ../../lib/${MACHTYPE}
+MYLIBS =  ${MYLIBDIR}/jkhgap.a ${MYLIBDIR}/jkOwnLib.a ${MYLIBDIR}/jkweb.a
+
+COMMONO = phyloPlace.o parsimonyProto.o runUsher.o treeToAuspiceJson.o vcfFromFasta.o \
+	  writeCustomTracks.o
+
+A = hgPhyloPlace
+O = hgPhyloPlace.o ${COMMONO}
+
+include ../../inc/cgi_build_rules.mk
+
+UTILA = phyloPlace
+UTILO = phyloPlaceMain.o ${COMMONO}
+
+compile: compileCgi ${UTILA}
+
+compileCgi: $O
+	${CC} ${CFLAGS} $O ${MYLIBS} ${L}
+	mv ${AOUT} $A${EXE}
+
+${UTILA}: ${UTILO}
+	${CC} ${CFLAGS} -o ${UTILA} ${UTILO} ${MYLIBS} ${L}
+
+clean::
+	rm -f ${UTILO} ${UTILA}