0ede364a2dcb452681933d5a3579b4f05d90a245
markd
  Sun Jul 5 15:16:27 2020 -0700
fixed bug where totalSeqSize was not stored in index, now hgBlat works

diff --git src/hg/lib/blatServers.c src/hg/lib/blatServers.c
index e2fc619..d1c23ee 100644
--- src/hg/lib/blatServers.c
+++ src/hg/lib/blatServers.c
@@ -1,141 +1,146 @@
 /* blatServers.c was originally generated by the autoSql program, which also 
  * generated blatServers.h and blatServers.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "blatServers.h"
 
 
 
-char *blatServersCommaSepFieldNames = "db,host,port,isTrans,canPcr";
+char *blatServersCommaSepFieldNames = "db,host,port,isTrans,canPcr,dynamic";
 
 void blatServersStaticLoad(char **row, struct blatServers *ret)
 /* Load a row from blatServers table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->db = row[0];
 ret->host = row[1];
 ret->port = sqlSigned(row[2]);
 ret->isTrans = sqlSigned(row[3]);
 ret->canPcr = sqlSigned(row[4]);
+ret->dynamic = sqlSigned(row[5]);
 }
 
 struct blatServers *blatServersLoad(char **row)
 /* Load a blatServers from row fetched with select * from blatServers
  * from database.  Dispose of this with blatServersFree(). */
 {
 struct blatServers *ret;
 
 AllocVar(ret);
 ret->db = cloneString(row[0]);
 ret->host = cloneString(row[1]);
 ret->port = sqlSigned(row[2]);
 ret->isTrans = sqlSigned(row[3]);
 ret->canPcr = sqlSigned(row[4]);
+ret->dynamic = sqlSigned(row[5]);
 return ret;
 }
 
 struct blatServers *blatServersLoadAll(char *fileName) 
 /* Load all blatServers from a whitespace-separated file.
  * Dispose of this with blatServersFreeList(). */
 {
 struct blatServers *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[5];
+char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = blatServersLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct blatServers *blatServersLoadAllByChar(char *fileName, char chopper) 
 /* Load all blatServers from a chopper separated file.
  * Dispose of this with blatServersFreeList(). */
 {
 struct blatServers *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
-char *row[5];
+char *row[6];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = blatServersLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct blatServers *blatServersCommaIn(char **pS, struct blatServers *ret)
 /* Create a blatServers out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new blatServers */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->db = sqlStringComma(&s);
 ret->host = sqlStringComma(&s);
 ret->port = sqlSignedComma(&s);
 ret->isTrans = sqlSignedComma(&s);
 ret->canPcr = sqlSignedComma(&s);
+ret->dynamic = sqlSignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void blatServersFree(struct blatServers **pEl)
 /* Free a single dynamically allocated blatServers such as created
  * with blatServersLoad(). */
 {
 struct blatServers *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->db);
 freeMem(el->host);
 freez(pEl);
 }
 
 void blatServersFreeList(struct blatServers **pList)
 /* Free a list of dynamically allocated blatServers's */
 {
 struct blatServers *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     blatServersFree(&el);
     }
 *pList = NULL;
 }
 
 void blatServersOutput(struct blatServers *el, FILE *f, char sep, char lastSep) 
 /* Print out blatServers.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->db);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->host);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->port);
 fputc(sep,f);
 fprintf(f, "%d", el->isTrans);
 fputc(sep,f);
 fprintf(f, "%d", el->canPcr);
+fputc(sep,f);
+fprintf(f, "%d", el->dynamic);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */