be4311c07e14feb728abc6425ee606ffaa611a58
markd
  Fri Jan 22 06:46:58 2021 -0800
merge with master

diff --git src/hg/makeDb/trackDb/human/covidHgiGwas.ra src/hg/makeDb/trackDb/human/covidHgiGwas.ra
index 5841af3..11ddf8c 100644
--- src/hg/makeDb/trackDb/human/covidHgiGwas.ra
+++ src/hg/makeDb/trackDb/human/covidHgiGwas.ra
@@ -1,76 +1,94 @@
-track covidHgiGwasR4
-shortLabel COVID GWAS R4
-longLabel GWAS meta-analyses Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative
+track covidHgiGwasR4Pval
+shortLabel COVID GWAS v4
+longLabel COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)
 compositeTrack on
 group covid
 visibility hide
 autoScale on
 maxHeightPixels 48:75:128
-pennantIcon New red
+pennantIcon New red ../goldenPath/newsarch.html#010821 "Released Dec. 23, 2020"
 type bigLolly 9 +
-lollyField 21
-mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount
+lollyField 13
+mouseOver $name $ref/$alt effect $effectSize pVal $pValue studies $sourceCount
 maxItems 500000
+viewLimits 0:10
 filter.sourceCount 1
 filterLabel.sourceCount Minimum number of studies
 filter.pValueLog 3
 filter.effectSize -1.6:2.2
 filterLimits.effectSize -1.6:2.2
 filterLabel.effectSize Effect size range
 filterByRange.effectSize on
 filter._effectSizeAbs 0
 filterLabel._effectSizeAbs Minimum effect size +-
 noScoreFilter on
 bedNameLabel SNP
+priority 1
 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22
 
-    track covidHgiGwasR4C2
-    parent covidHgiGwasR4 on
-    shortLabel COVID GWAS R4
-    longLabel COVID GWAS Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (17965 cases, 33 studies)
-    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4C2.$D.bb
+    track covidHgiGwasR4PvalA2
+    parent covidHgiGwasR4Pval on
+    shortLabel Severe COVID vars
+    longLabel Severe respiratory COVID risk variants from the COVID-19 HGI GWAS Analysis A2 (4336 cases, 12 studies, Rel 4: Oct 2020)
+    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.A2.$D.bb
+    priority 1
+
+    track covidHgiGwasR4PvalB2
+    parent covidHgiGwasR4Pval on
+    shortLabel Hosp COVID vars
+    longLabel Hospitalized COVID risk variants from the COVID-19 HGI GWAS Analysis B2 (7885 cases, 21 studies, Rel 4: Oct 2020)
+    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.B2.$D.bb
+    priority 2
 
-    track covidHgiGwasR4B2
-    parent covidHgiGwasR4 off
-    shortLabel Hosp COVID GWAS R4
-    longLabel Hospitalized COVID GWAS Release 4 (Oct 2020) from the COVID-19 Host Genetics Initiative (7885 cases, 21 studies)
-    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4B2.$D.bb
+    track covidHgiGwasR4PvalC1
+    parent covidHgiGwasR4Pval on
+    shortLabel Tested COVID vars
+    longLabel Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020)
+    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.C1.$D.bb
+    priority 3
 
+    track covidHgiGwasR4PvalC2
+    parent covidHgiGwasR4Pval on
+    shortLabel All COVID vars
+    longLabel COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020)
+    bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasR4.C2.$D.bb
+    priority 4
 
 track covidHgiGwas
-shortLabel COVID-19 GWAS
+shortLabel COVID GWAS v3
 longLabel GWAS meta-analyses from the COVID-19 Host Genetics Initiative
 compositeTrack on
 group covid
 visibility hide
 autoScale on
 maxHeightPixels 48:75:128
 type bigLolly 9 +
 lollyField 21
 mouseOver $name $ref/$alt effect $effectSize pval $pValue studies $sourceCount
 maxItems 500000
 filter.sourceCount 1
 filterLabel.sourceCount Minimum number of studies
 filter.pValueLog 3
+viewLimits -13:21
 filter.effectSize -13:21
 filterLimits.effectSize -13:21
 filterLabel.effectSize Effect size range
 filterByRange.effectSize on
 filter._effectSizeAbs 0
 filterLabel._effectSizeAbs Minimum effect size +-
 noScoreFilter on
 bedNameLabel SNP
 chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22
 
     track covidHgiGwasC2
     parent covidHgiGwas on
     shortLabel COVID GWAS
     longLabel COVID GWAS from the COVID-19 Host Genetics Initiative (6696 cases, 18 studies)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasC2.$D.bb
 
     track covidHgiGwasB2
     parent covidHgiGwas off
     shortLabel Hosp COVID GWAS
     longLabel Hospitalized COVID GWAS from the COVID-19 Host Genetics Initiative (3199 cases, 8 studies)
     bigDataUrl /gbdb/$D/covidHgiGwas/covidHgiGwasB2.$D.bb