06d7be056190c14b85e71bc12523f18ea6815b5e
markd
  Mon Dec 7 00:50:29 2020 -0800
BLAT mmap index support merge with master

diff --git src/hg/makeDb/trackDb/human/trackDb.giab.ra src/hg/makeDb/trackDb/human/trackDb.giab.ra
index 4b7fc1d..9685a51 100644
--- src/hg/makeDb/trackDb/human/trackDb.giab.ra
+++ src/hg/makeDb/trackDb/human/trackDb.giab.ra
@@ -1,68 +1,69 @@
 track giab
 shortLabel Genome In a Bottle
 longLabel Genome In a Bottle Structural Variants and Trios
 compositeTrack on
 visibility hide
-subGroup1 view Views trios=trios sv=Structural_Variants
+subGroup1 view Views trios=Trios sv=Structural_Variants
 type bed 3
 group varRep
 html giab
+pennantIcon New red /goldenPath/newsarch.html#111620 "Released Nov. 16, 2020"
 
     track svView
-    shortLabel Genome In a Bottle Structural Variants
-    longLabel Genome in a Bottle Structural Variants (dbVar nstd175)
+    shortLabel Structural Variants
+    longLabel Genome In a Bottle Structural Variants (dbVar nstd175)
     view sv
     type bigBed 9 +
     parent giab
+    visibility pack
 
         track giabSv
         parent svView
-        shortLabel Genome In a Bottle Structural Variants
+        shortLabel Structural Variants
         longLabel Genome in a Bottle Structural Variants (dbVar nstd175)
         type bigBed 9 +
         subGroups view=sv
         itemRgb on
         url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails
         urlLabel dbVar Variant Details:
         urls dbVarUrl="$$"
         mouseOverField _mouseOver
         bigDataUrl /gbdb/$D/giab/structuralVariants/giabSv.bb
 
     track triosView
     shortLabel Genome In a Bottle Trios
     longLabel Genome in a Bottle Ashkenazim and Chinese Trios
     view trios
     type vcfPhasedTrio
     parent giab
+    visibility hide
 
         track ashkenazimTrio
         parent triosView
         shortLabel Ashkenazim Trio
         longLabel Genome In a Bottle Ashkenazim Trio
         type vcfPhasedTrio
         subGroups view=trios
         bigDataUrl /gbdb/$D/giab/AshkenazimTrio/merged.vcf.gz
         maxWindowToDraw 5000000
         vcfUseAltSampleNames on
         vcfDoFilter off
         vcfDoQual off
         vcfDoMaf off
         vcfChildSample HG002|son
         vcfParentSamples HG003|father,HG004|mother
-        visibility dense
 
         track chineseTrio
         parent triosView
         shortLabel Chinese Trio
         longLabel Genome In a Bottle Chinese  Trio
         type vcfPhasedTrio
         subGroups view=trios
         bigDataUrl /gbdb/$D/giab/ChineseTrio/merged.vcf.gz
         maxWindowToDraw 5000000
         vcfUseAltSampleNames on
         vcfDoFilter off
         vcfDoQual off
         vcfDoMaf off
         vcfChildSample HG005|son
         vcfParentSamples HG006|father,HG007|mother
-        visibility dense