06d7be056190c14b85e71bc12523f18ea6815b5e
markd
  Mon Dec 7 00:50:29 2020 -0800
BLAT mmap index support merge with master

diff --git src/hg/utils/otto/dbVar/giabSv.as src/hg/utils/otto/dbVar/giabSv.as
index cd5288e..4d716f3 100644
--- src/hg/utils/otto/dbVar/giabSv.as
+++ src/hg/utils/otto/dbVar/giabSv.as
@@ -1,23 +1,21 @@
 table giabSv 
 "Genome In a Bottle Structural Variants (dbVar nstd175)"
     (
     string chrom;      "Reference sequence chromosome or scaffold"
     uint   chromStart; "Start position in chromosome"
     uint   chromEnd;   "End position in chromosome"
     string name;       "Short Name of item"
     uint   score;      "Score from 0-1000"
     char[1] strand;    "+ or -"
     uint thickStart;   "Start of where display should be thick (start codon)"
     uint thickEnd;     "End of where display should be thick (stop codon)"
     uint reserved;     "Used as itemRgb as of 2004-11-22"
     int size;          "Size of variant"
     string varType;    "Type of structural variant"
     string varRegion;     "Variant Region"
     string dbVarUrl ;  "dbVar Region Link"
     string sample_name; "Sample Name"
     string sampleset_name; "Sampleset Name"
     string phenotype;  "Phenotype"
-    string Variant_seq; "Variant Sequence"
-    string Reference_seq; "Reference Sequence"
     lstring _mouseOver; "mouseover string"
     )