ef2b0974644900d17bdc4e0a2c8056e995832282 markd Thu Jan 16 11:14:03 2020 -0800 Revert "Initial pass at 64bit blat index" This reverts commit 85f6ef8de85a89781978add2ed98fb158718cd40. diff --git src/inc/ooc.h src/inc/ooc.h index 5633728..5b0bd9b 100644 --- src/inc/ooc.h +++ src/inc/ooc.h @@ -1,16 +1,16 @@ /* ooc.h - Stuff to handle overused N-mers (tiles) in genome * indexing schemes. */ /* Copyright 2001-2002 Jim Kent. All rights reserved. */ #ifndef OOC_H #define OOC_H -void oocMaskCounts(char *oocFile, bits64 *tileCounts, int tileSize, bits32 maxPat); +void oocMaskCounts(char *oocFile, bits32 *tileCounts, int tileSize, bits32 maxPat); /* Set items of tileCounts to maxPat if they are in oocFile. * Effectively masks this out of index.*/ -void oocMaskSimpleRepeats(bits64 *tileCounts, int seedSize, bits32 maxPat); +void oocMaskSimpleRepeats(bits32 *tileCounts, int seedSize, bits32 maxPat); /* Mask out simple repeats in index . */ #endif /* OOC_H */